DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment haf and Lrig3

DIOPT Version :9

Sequence 1:NP_001356954.1 Gene:haf / 33339 FlyBaseID:FBgn0261509 Length:1347 Species:Drosophila melanogaster
Sequence 2:XP_216905.5 Gene:Lrig3 / 299830 RGDID:1561255 Length:1116 Species:Rattus norvegicus


Alignment Length:951 Identity:197/951 - (20%)
Similarity:328/951 - (34%) Gaps:274/951 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LPLILGRLHVAHAQCPWQRDVPDLQTSCICAYNLGRELSVQCDQVD-----------FSQLLAAM 74
            ||..:.||.::|.:..:      :|.|.:......:|:.:..::::           ..||..|.
  Rat    72 LPAWVTRLDLSHNRLSF------IQASSLSHLQSLQEVKLNNNELETIPNLGPVSANIRQLSLAG 130

  Fly    75 NTHARLKP--------VDLLYVNNSTISELPDAVFSNLSLHNLQLSSCGIQRIATGAFKGQESVL 131
            |...::.|        ::.|.::|:.||||..| |..|.|..|.::|..:..:..|.|....|.|
  Rat   131 NAIDKILPEQLEAFQSLETLDLSNNNISELRTA-FPPLQLKYLYINSNRVTSMEPGYFDNLGSTL 194

  Fly   132 RNLNLQDNLLADVPVEALKVLGKLNLLDLSKNQLSHIPDDAFVGLTKLSTLKLNDNNVT-LASNA 195
            ..|.|..|.::.:|.:..| |.:|..|:|::|::.::....|.||..|.:||:..|.|| |...|
  Rat   195 LVLKLNRNRISAIPPKMFK-LPQLQHLELNRNKIKNVDGLTFQGLGALKSLKMQRNGVTKLMDGA 258

  Fly   196 FRGLEQ-----------------------SLKNLNLKGTKQRKV-PESIRGLKSLAFLDLSQNGI 236
            |.||..                       .|:.|:|......:: |::....:.|:.|||:.|.:
  Rat   259 FWGLSNMEILQLDHNNLTEITKGWLYGLLMLRELHLSQNAINRISPDAWEFCQKLSELDLTFNHL 323

  Fly   237 KELPGAGGIRVFDGLDALTALNLERNLIQSIGETAFAGVRKTLSSLSLLNNLLA---EFPIGAVH 298
            ..|..:.    |.||..|.||::..|.:..|.:.||.|: .:|.:|.|.||.::   |...||..
  Rat   324 SRLDDSS----FLGLSLLNALHVGNNKVSYIADCAFRGL-SSLKTLDLRNNEISWTIEDMNGAFS 383

  Fly   299 SLKELRVLDIGFNLLTSLPEAAFRGNPGITLLALDGNPLSSVPEGAFAHLNATLRGLSLGGRFLH 363
            .|.:||.|.:..|.:.|:.:.||.|...:..|.|.||.:.|:...||:.:. .|:.|.|....|.
  Rat   384 GLDKLRQLILQGNRIRSITKKAFAGLDTLEHLDLSGNAIMSLQNNAFSQMK-KLQQLHLNTSSLL 447

  Fly   364 CDCKLRWVAEWIRNGDLQVTSRERNPQF----CGTPPRFRDRGFYSIQPEELSCPDIADAALRGP 424
            |||:|:|:.:|:...:.|        .|    |..|...:.|..:::.|:...|.|..       
  Rat   448 CDCQLKWLPQWVAENNFQ--------SFVNASCAHPQPLKGRSIFTVSPDGFVCDDFP------- 497

  Fly   425 VGLADNLKPTLPSSPDSVEYETGTGTGTVGTGTAASAPVTSSVSSSTSTTTPTTTTTTTTAEPTT 489
                   ||.:...|:       |.:...|:..:.:.   |:.|||.|..|..........:...
  Rat   498 -------KPQITVQPE-------TQSAIKGSDVSFTC---SAASSSDSPMTFAWKKDNEALQDAE 545

  Fly   490 RRSTTRPPTKSTTTISATTASPASNPPVNGTGTVQATSITTSSSSSSS-----------SSTST- 542
            ..:......:....:..||.....|......|..|.. |:....||.|           |.|.| 
  Rat   546 MENYAHLRAQGGELMEYTTILRLRNVEFASEGRYQCV-ISNHFGSSYSVKARLTINMLPSFTKTP 609

  Fly   543 ------------------GH---------GNGKQAPGWRQ----------------------GVT 558
                              ||         ..|...|..|:                      ||.
  Rat   610 MDLTIRAGAMARLECAAVGHPAPQIAWQKDGGIDFPAARERRMHVMPEDDVFFIVDVKIEDIGVY 674

  Fly   559 NGNGNSGVGGAGG------LHKPQ--RPPL----------VL-----GYPPQR--GTRIDDANEV 598
            :....:..|....      |..|.  ||.|          ||     |.||.|  .|:.|....|
  Rat   675 SCTAQNSAGSVSANATLTVLETPSFLRPLLDRTVTKGETAVLQCIAGGSPPPRLNWTKDDSPLVV 739

  Fly   599 QVKHAFRQDSSVIIQWDSDTANILGFRVVYRLFGEKAFKQGPPLESSEREFKIKNVPAQECIIVC 663
            ..:|.|...:.::|..|||.::.          |:...:....|.:.....::..:|...|    
  Rat   740 TERHFFAAGNQLLIIVDSDVSDA----------GKYTCEMSNTLGTERGNVRLSVIPTPTC---- 790

  Fly   664 VISLEELHVTPETVPYQQCREVRTVASQASNMDKITIAASAAICGTIIVAVIVFIAASRRSRKLQ 728
                :..|:|..::.          ....:.:..:.||....:.||.:|.|::.....||:..  
  Rat   791 ----DSPHMTAPSLD----------GDGWATVGVVIIAVVCCVVGTSLVWVVIIYHTRRRNED-- 839

  Fly   729 SSQQKSPLPIGGLPVNCCGPTGSPGPLGSIATLSAFNNHKEWDQVSAYSGRSIPRPRIYPVEQPD 793
                             |..|.:                   |:.:.                |.
  Rat   840 -----------------CSITNT-------------------DETNL----------------PA 852

  Fly   794 DMRSHFSGMPGKVGKSRSLADGQSQH-SFSNNSHRGYLGSA 833
            |:.|:.|       ...:|||.|..: |..|.||..::.|:
  Rat   853 DIPSYLS-------SQGTLADRQDGYISSENGSHHQFVTSS 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hafNP_001356954.1 LRR <52..>252 CDD:227223 58/243 (24%)
leucine-rich repeat 86..105 CDD:275380 8/18 (44%)
leucine-rich repeat 106..129 CDD:275380 5/22 (23%)
LRR_8 131..189 CDD:338972 18/57 (32%)
leucine-rich repeat 131..154 CDD:275380 7/22 (32%)
leucine-rich repeat 155..178 CDD:275380 7/22 (32%)
leucine-rich repeat 179..202 CDD:275380 11/46 (24%)
leucine-rich repeat 203..225 CDD:275380 4/22 (18%)
leucine-rich repeat 226..253 CDD:275380 9/26 (35%)
LRR_8 254..337 CDD:338972 29/85 (34%)
leucine-rich repeat 254..302 CDD:275380 17/50 (34%)
leucine-rich repeat 303..326 CDD:275380 8/22 (36%)
leucine-rich repeat 327..350 CDD:275380 7/22 (32%)
PCC 332..>413 CDD:188093 22/84 (26%)
PRK10927 <1061..>1097 CDD:236797
Lrig3XP_216905.5 LRR_RI <68..228 CDD:238064 39/163 (24%)
LRR_8 76..133 CDD:290566 10/62 (16%)
leucine-rich repeat 76..99 CDD:275378 5/28 (18%)
leucine-rich repeat 100..115 CDD:275378 1/14 (7%)
LRR_8 122..179 CDD:290566 17/57 (30%)
leucine-rich repeat 147..168 CDD:275380 8/21 (38%)
LRR_8 168..227 CDD:290566 17/59 (29%)
leucine-rich repeat 169..192 CDD:275380 5/22 (23%)
leucine-rich repeat 194..216 CDD:275380 7/22 (32%)
LRR_8 215..275 CDD:290566 18/59 (31%)
LRR_4 215..254 CDD:289563 13/38 (34%)
leucine-rich repeat 217..240 CDD:275380 7/22 (32%)
leucine-rich repeat 241..264 CDD:275380 11/22 (50%)
LRR_RI 262..>446 CDD:238064 49/189 (26%)
LRR_8 263..323 CDD:290566 9/59 (15%)
leucine-rich repeat 265..288 CDD:275380 0/22 (0%)
leucine-rich repeat 289..312 CDD:275380 4/22 (18%)
LRR_8 312..371 CDD:290566 22/63 (35%)
leucine-rich repeat 313..336 CDD:275380 9/26 (35%)
leucine-rich repeat 337..360 CDD:275380 8/23 (35%)
LRR_8 359..422 CDD:290566 21/62 (34%)
leucine-rich repeat 361..385 CDD:275380 8/23 (35%)
leucine-rich repeat 388..411 CDD:275380 8/22 (36%)
leucine-rich repeat 412..435 CDD:275380 7/23 (30%)
LRRCT 446..494 CDD:214507 13/55 (24%)
Ig_3 498..585 CDD:290638 17/97 (18%)
I-set 499..599 CDD:254352 19/110 (17%)
I-set 603..693 CDD:254352 11/89 (12%)
Ig_1 620..694 CDD:143240 8/73 (11%)
I-set 697..784 CDD:254352 21/96 (22%)
IGc2 711..774 CDD:197706 16/72 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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