DRSC/TRiP Functional Genomics Resources

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Protein Alignment haf and Lrig2

DIOPT Version :9

Sequence 1:NP_001356954.1 Gene:haf / 33339 FlyBaseID:FBgn0261509 Length:1347 Species:Drosophila melanogaster
Sequence 2:NP_001020238.1 Gene:Lrig2 / 269473 MGIID:2443718 Length:1054 Species:Mus musculus


Alignment Length:991 Identity:206/991 - (20%)
Similarity:349/991 - (35%) Gaps:259/991 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TALP--AATTPLLLLLPLILGRLHVAHAQCPWQRDVPDLQTSCICAYNLGRELSVQCDQVDFSQL 70
            |.:|  ...||.:.||.|:                           :||..|::.:         
Mouse   109 TEIPYFGEPTPNITLLSLV---------------------------HNLIPEINAE--------- 137

  Fly    71 LAAMNTHARLKPVDLLYVNNSTISELPDAVFSNLSLHNLQLSSCGIQRIATGAFKGQESVLRNLN 135
              |...::.|:.:||   :::.|||:..:.|..:||..|.||:..|..:..|.|......|..:.
Mouse   138 --AFELYSALESLDL---SSNIISEIKTSSFPRMSLKYLNLSNNRISTLEAGCFDNLSDSLLVVK 197

  Fly   136 LQDNLLADVPVEALKVLGKLNLLDLSKNQLSHIPDDAFVGLTKLSTLKLNDNNVT-LASNAFRGL 199
            |..|.::.:|.:..| |..|..|:|.:|::..:....|.||..|.:||:..|.:: |...||.||
Mouse   198 LNRNRISMIPPKVFK-LPHLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGL 261

  Fly   200 ----EQSLKNLNLKGTKQRKVPESIRGLKSLAFLDLSQNGIKEL-PGAGGIRVFDGLDALTALNL 259
                |..|::.||.|..:    ..:.||:.|..|.:|||.|::: |.|     ::....|:.|:|
Mouse   262 NNMEELELEHNNLTGVNK----GWLYGLRMLQQLYMSQNAIEKISPDA-----WEFCQRLSELDL 317

  Fly   260 ERNLIQSIGETAFAGVRKTLSSLSLLNNLLAEFPIGAVHSLKELRVLDIGFNLLT-SLPEA--AF 321
            ..|.:..:.|:||.|: ..|..|:|.:|.:.....|....|..|:.||:..|.:: ::.:|  ||
Mouse   318 SYNQLTRLDESAFVGL-SLLERLNLGDNRVTHIADGVFRFLSNLQTLDLRNNDISWAIEDASEAF 381

  Fly   322 RGNPGITLLALDGNPLSSVPEGAFAHLNAT----------------------LRGLSLGGRFLHC 364
            .|...:|.|.|.||.:.||.:.||..|.:.                      |:||.|....|.|
Mouse   382 SGLKSLTKLILQGNRIKSVTQKAFIGLESLEYLDLNNNAIMSIQENAFSQTHLKGLVLNTSSLLC 446

  Fly   365 DCKLRWVAEWIRNGDLQVTSRERNPQFCGTPPRFRDRGFYSIQPEELSCPDIADAALRGPVGLAD 429
            ||.|:|:.:|:.:.:...:....    |..|.....:...::..::..|.|.             
Mouse   447 DCHLKWLLQWLVDNNFHHSVNVS----CAHPEWLAGQSILNVDLKDFVCDDF------------- 494

  Fly   430 NLKPTLPSSPDSVEYETGTGTGTVGTGTAASAPVTSSVSSSTSTTTPTTTTTTTTAE---PTTRR 491
             |||.:.:.|:|             |.......||.:.::.:|:.:|.:|.....:|   .....
Mouse   495 -LKPQIRTHPES-------------TIALRGVNVTLTCTAVSSSDSPMSTIWRKDSEILYDVDIE 545

  Fly   492 STTRPPTKSTTTISATTASPASNPPVNGTGTVQATSITTSSSSSSSSSTSTGHGNGKQAPGWRQG 556
            :..|...:....:..|:.....:  ||.|...:...|.|:...|:.|..:....|  :.|.:.:.
Mouse   546 NFVRYRQQDGEALEYTSVLRLFS--VNFTDEGKYQCIVTNHFGSNYSQKAKLTVN--EMPSFLKT 606

  Fly   557 VTNGNGNSGV-----GGAGGLHKPQRPPLVLGYPPQRGTRIDDANEVQVKHAFRQDSSVIIQ--- 613
            ..:....:|.     ..|.|...||     :.:....||....|.|.:: |...:|....|.   
Mouse   607 PMDLTIRTGAMARLECAAEGHPTPQ-----ISWQKDGGTDFPAARERRM-HVMPEDDVFFIANVK 665

  Fly   614 ------WDSDTANILG---------------------FRVVYRLFGEKAF--------------- 636
                  :.....||.|                     .:.|.|  ||.|.               
Mouse   666 IEDMGIYSCMAQNIAGGLSANASLTVLETPSFIRPLEDKTVTR--GETAVLQCIAGGSPAPRLNW 728

  Fly   637 -KQGPPLESSEREF-------------KIKNVPAQECIIVCVISLEELHVTPETVPYQQCREVRT 687
             |...||..:||.|             .:::.....|::...:..|..|:....:....|.    
Mouse   729 TKDDGPLLVTERHFFAAANQLLIIVDAGLEDAGKYTCLMSNTLGTERGHIYLNVISSPNCD---- 789

  Fly   688 VASQAS---------NMDKITIAASAAICGTIIVAVIVFIAASRRSRKLQSSQQKSPLPIGGLPV 743
             :||:|         .:..:.|.....:.||.::.||| |...||..:..|......|.:     
Mouse   790 -SSQSSIGHEDDGWTTVGIVIIVVVCCVVGTSLIWVIV-IYHMRRKNEDYSITNTEELNL----- 847

  Fly   744 NCCGPTGSPGPLGSIATLS----AFNN-----HKE--------------------------WDQV 773
                |...|..|.|..|||    .::|     |::                          :|..
Mouse   848 ----PADIPSYLSSQGTLSEPQEGYSNSEAGSHQQLMPPANGYTHRGTDGGAGTRVICSDCYDNA 908

  Fly   774 SAYSGRSIPRPRIYPVEQ---PDDMRSHFSGMPGKVGKSRSLADGQSQHSFSNNSHRGYLGSAFP 835
            :.||......|..|..|:   ...:.|....||.:...|....|..:..|...::.|.  .:|||
Mouse   909 NIYSRTREYCPYTYIAEEDVLDQALSSLMVQMPKETFLSHPPQDAANLESLIPSAERE--PAAFP 971

  Fly   836 SNLVNSRPELRQSRQS 851
            :|.......|..|::|
Mouse   972 TNHERMTENLPFSQRS 987

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hafNP_001356954.1 LRR <52..>252 CDD:227223 56/205 (27%)
leucine-rich repeat 86..105 CDD:275380 4/18 (22%)
leucine-rich repeat 106..129 CDD:275380 7/22 (32%)
LRR_8 131..189 CDD:338972 17/57 (30%)
leucine-rich repeat 131..154 CDD:275380 6/22 (27%)
leucine-rich repeat 155..178 CDD:275380 7/22 (32%)
leucine-rich repeat 179..202 CDD:275380 10/27 (37%)
leucine-rich repeat 203..225 CDD:275380 6/21 (29%)
leucine-rich repeat 226..253 CDD:275380 8/27 (30%)
LRR_8 254..337 CDD:338972 27/85 (32%)
leucine-rich repeat 254..302 CDD:275380 14/47 (30%)
leucine-rich repeat 303..326 CDD:275380 8/25 (32%)
leucine-rich repeat 327..350 CDD:275380 10/22 (45%)
PCC 332..>413 CDD:188093 21/102 (21%)
PRK10927 <1061..>1097 CDD:236797
Lrig2NP_001020238.1 LRR_RI <16..204 CDD:238064 29/135 (21%)
leucine-rich repeat 53..75 CDD:275378
LRR 1 75..96
LRR 2 97..118 2/8 (25%)
leucine-rich repeat 98..120 CDD:275380 3/10 (30%)
LRR_8 119..178 CDD:290566 20/99 (20%)
LRR 3 120..141 7/58 (12%)
leucine-rich repeat 121..144 CDD:275380 7/60 (12%)
LRR_RI <136..344 CDD:238064 64/232 (28%)
LRR 4 144..165 7/23 (30%)
leucine-rich repeat 145..167 CDD:275380 7/24 (29%)
LRR_8 167..226 CDD:290566 18/59 (31%)
LRR 5 167..188 8/20 (40%)
leucine-rich repeat 168..192 CDD:275380 7/23 (30%)
LRR 6 192..213 5/21 (24%)
leucine-rich repeat 193..215 CDD:275380 6/22 (27%)
LRR 7 215..236 5/20 (25%)
leucine-rich repeat 216..239 CDD:275380 7/22 (32%)
LRR_8 239..298 CDD:290566 21/62 (34%)
LRR 8 239..260 7/20 (35%)
leucine-rich repeat 240..263 CDD:275380 9/22 (41%)
LRR 9 263..284 5/24 (21%)
leucine-rich repeat 264..287 CDD:275380 7/26 (27%)
LRR 10 287..308 8/25 (32%)
leucine-rich repeat 288..311 CDD:275380 8/27 (30%)
LRR_8 311..370 CDD:290566 18/59 (31%)
LRR 11 311..332 7/20 (35%)
leucine-rich repeat 312..335 CDD:275380 8/23 (35%)
LRR 12 335..356 5/20 (25%)
leucine-rich repeat 336..359 CDD:275380 6/22 (27%)
LRR_8 358..421 CDD:290566 18/62 (29%)
LRR_4 359..401 CDD:289563 14/41 (34%)
LRR 13 359..381 5/21 (24%)
leucine-rich repeat 360..384 CDD:275380 7/23 (30%)
LRR_4 385..426 CDD:289563 10/40 (25%)
LRR 14 386..407 9/20 (45%)
leucine-rich repeat 387..410 CDD:275380 10/22 (45%)
LRR 15 410..431 0/20 (0%)
leucine-rich repeat 411..430 CDD:275380 0/18 (0%)
LRRCT 444..492 CDD:214507 9/51 (18%)
Ig 501..597 CDD:299845 18/110 (16%)
IG_like 503..597 CDD:214653 18/108 (17%)
I-set 601..691 CDD:254352 16/95 (17%)
Ig_1 618..692 CDD:143240 14/79 (18%)
I-set 695..782 CDD:254352 14/88 (16%)
Ig 713..782 CDD:299845 9/68 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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