DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7420 and rcc1l

DIOPT Version :10

Sequence 1:NP_001259871.1 Gene:CG7420 / 33332 FlyBaseID:FBgn0031344 Length:388 Species:Drosophila melanogaster
Sequence 2:NP_001076272.1 Gene:rcc1l / 555972 ZFINID:ZDB-GENE-060526-370 Length:451 Species:Danio rerio


Alignment Length:316 Identity:78/316 - (24%)
Similarity:122/316 - (38%) Gaps:79/316 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VYAWGANSHGQLGLGF-ESELCMTPQRVAKCSFAPAQVRLIRGGGGHVLILDTSGRIHACGWNNR 66
            |::.|:|:.||.|... |.|:......|.|.....::|..:..|..|.|.|...|.:.||||...
Zfish   182 VFSMGSNTFGQCGRKIVEDEVYSGSHVVHKIEGFDSRVIQVACGQDHSLFLTDRGSVFACGWGAD 246

  Fly    67 GQLGLDSTEECHSEFKMIPTEYFGD---VPVETISCGWDISGAITLTKRLFVWGSNAFQQLGICQ 128
            ||.||.     |......|....||   |.|:.::...|.|.|::...::|.||::.:.||    
Zfish   247 GQTGLG-----HHNKASCPVPVGGDLAGVTVQQVATYGDCSLAVSTDGQVFGWGNSEYLQL---- 302

  Fly   129 RGFTAVRRPMPVKLPREEPAQRI------SFGLRHCAVLTQDNKIYVFGRLRIMDPPPIELDITA 187
               .:|.....:..||..|.:.:      :.|....|||.:|..::|:| ..|:...|       
Zfish   303 ---ASVTESTQISSPRLLPLKGVGRIRQAACGGTQVAVLNEDGDVFVWG-FGILGKGP------- 356

  Fly   188 TCLHRCNTVKIQVHNPNELRIVSISSGQNHMVLKCADLSETGGGSTKRILTLGDNKFGQSNAFQF 252
                                                .|||:  ...:|:..   ..||:|   :|
Zfish   357 ------------------------------------KLSES--AIPERVPA---TFFGRS---EF 377

  Fly   253 EEDVRQLAV--GWTHNAAVLKNNEILVWGRNCYGQLGMGSFSEQQAIPTPLRLKLP 306
            ...|:..::  |.:|.|||....|:.|||:|..|.||:|...:|.   .|.|:.:|
Zfish   378 NPTVKVASIRCGLSHFAAVTDGGELFVWGKNVRGCLGIGKHDDQY---FPWRVTVP 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7420NP_001259871.1 ATS1 3..348 CDD:444065 78/316 (25%)
rcc1lNP_001076272.1 RCC1 52..108 CDD:395335
ATS1 100..449 CDD:444065 78/316 (25%)
Blue background indicates that the domain is not in the aligned region.

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