DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7420 and Herc2

DIOPT Version :10

Sequence 1:NP_001259871.1 Gene:CG7420 / 33332 FlyBaseID:FBgn0031344 Length:388 Species:Drosophila melanogaster
Sequence 2:XP_006229362.1 Gene:Herc2 / 308669 RGDID:1307989 Length:4836 Species:Rattus norvegicus


Alignment Length:392 Identity:88/392 - (22%)
Similarity:152/392 - (38%) Gaps:104/392 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EVYAWGANSHGQLGLGFESELCMTPQRVAKCSFAPA----QVRLIRGGGGHVLILDTSGRIHACG 62
            :|:.||.|...||| |.:......|      ||:..    .|..:.||...:..:...|::::||
  Rat  2961 KVFVWGLNDKDQLG-GLKGSKIKVP------SFSETLSALNVVQVAGGSKSLFAVTVEGKVYSCG 3018

  Fly    63 WNNRGQLGLDSTEECHSEFKMIPTEYFGDVPVE--------------TISCGWDISGAITLTKRL 113
            ....|:|||..:.              |.||:.              .:..|...:.|:|:..::
  Rat  3019 EATNGRLGLGMSS--------------GTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKV 3069

  Fly   114 FVWGSNAFQQLGICQRGFTAVRRPMPVKLPREEPAQRISFGLRHCAVLTQDNKIYV-----FGRL 173
            |.||.....:||...|  ....:|..::..:.:..:.|:.|..|.|.||...::|.     :|||
  Rat  3070 FSWGEGDDGKLGHFSR--MNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRL 3132

  Fly   174 RIMDPPPIELDITATCLHRCNTVKIQVHNPNELRIVSISSGQNHMVLKCAD-----LSETGGGST 233
            .                |..||.:::.      ::|.:..|...:.:.|..     |:.|..|  
  Rat  3133 G----------------HGDNTTQLKP------KMVKVLLGHRVIQVACGSRDAQTLALTDEG-- 3173

  Fly   234 KRILTLGDNKFGQ-----SNAFQFEEDVR--------QLAVGWTHNAAVLKNNEILVWGRNCYGQ 285
             .:.:.||..||:     |......:::.        |:..|...:.|:.|:..:..||:..|.:
  Rat  3174 -LVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFR 3237

  Fly   286 LGMGSFSEQQAIPTPLRLKLPED----QGPARIH--MGAEHGLLRTTAGEVYTWGWNEHGNCGNN 344
            ||.||         .:.::.|:.    :|...:|  :||.|.|..|.:|:||.||.|:||..||.
  Rat  3238 LGHGS---------DVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQGNG 3293

  Fly   345 ST 346
            :|
  Rat  3294 TT 3295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7420NP_001259871.1 ATS1 3..348 CDD:444065 88/391 (23%)
Herc2XP_006229362.1 ATS1 456..776 CDD:444065
Cyt-b5 1212..1283 CDD:459698
MIB_HERC2 1871..1931 CDD:461991
UBA_HERC2 2461..2508 CDD:270585
Cul7 2555..2632 CDD:463286
ZZ_HERC2 2707..2751 CDD:239084
APC10-HERC2 2766..2911 CDD:176485
ATS1 2962..3302 CDD:444065 88/391 (23%)
ATS1 3946..4294 CDD:444065
HECTc 4423..4794 CDD:238033
Blue background indicates that the domain is not in the aligned region.

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