DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7420 and Herc1

DIOPT Version :10

Sequence 1:NP_001259871.1 Gene:CG7420 / 33332 FlyBaseID:FBgn0031344 Length:388 Species:Drosophila melanogaster
Sequence 2:XP_006511166.1 Gene:Herc1 / 235439 MGIID:2384589 Length:4885 Species:Mus musculus


Alignment Length:462 Identity:90/462 - (19%)
Similarity:137/462 - (29%) Gaps:132/462 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 IQPDGQMPSDKTIGGGDDSFNTFFSETGAG---KHVPRAVFVD------------LEPTVVDEVR 87
            |.|.....||.:....||.|.....:.|.|   :|...|....            |...|:....
Mouse   161 ISPSEDKDSDSSKEPLDDLFPNDEDDPGQGIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYAS 225

  Fly    88 TGTYRQLFHP--EQLITGKEDAANNYARGHYTIGK--EIVDLVLDRIRKLADQCTGLQGFLIFHS 148
            .|.| ::..|  :|.:   ||........|..:..  .|:.||.....|..|....|...|....
Mouse   226 QGRY-EVAVPLCKQAL---EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 286

  Fly   149 FGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVD 213
            ...|......:..:..|:|.|||:.|.:    .|..:....:|....:|..    :|.|.|..::
Mouse   287 KTLGRDHPAVAATLNNLAVLYGKRGKYK----EAEPLCKRALEIREKVLGK----DHPDVAKQLN 343

  Fly   214 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLV 278
            |.|:  :|:.....|...|                  .:..||.:    :||.|.|..       
Mouse   344 NLAL--LCQNQGKYEEVEY------------------YYQRALEI----YQTKLGPDD------- 377

  Fly   279 TYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 343
               |.::..|                   |.:..|..:.||:.....||:          .|.|.
Mouse   378 ---PNVAKTK-------------------NNLASCYLKQGKFKQAETLYK----------EILTR 410

  Fly   344 KTKRTIQFVD------W--------CPTGFKVGINY------------QPPTVVPG-GDLAKVQR 381
            ..:|....||      |        |....|.|.::            ..|||... .:|..:.|
Mouse   411 AHEREFGSVDDENKPIWMHAEEREECKGKQKDGSSFGEYGGWYKACKVDSPTVTTTLKNLGALYR 475

  Fly   382 AVCMLSNTTAIAEAWARLDHK-FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD---YEE 442
            ..........:.||..|...: .|.::.:|      |.|.:.:.|..|.|....:|..|   ||.
Mouse   476 RQGKFEAAETLEEAALRSRKQGLDNVHKQR------VAEVLNDPENVEKRRSRESLNVDVVKYES 534

  Fly   443 VGMDSGD 449
             |.|.|:
Mouse   535 -GPDGGE 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7420NP_001259871.1 ATS1 3..348 CDD:444065 61/328 (19%)
Herc1XP_006511166.1 ATS1 374..703 CDD:444065 40/213 (19%)
RCC1 683..733 CDD:395335
SPRY_HERC1 2039..2196 CDD:293939
UBA_HERC1 2760..2803 CDD:270584
WD40 <3448..3802 CDD:441893
WD40 repeat 3456..3499 CDD:293791
WD40 repeat 3513..3548 CDD:293791
WD40 repeat 3610..3648 CDD:293791
WD40 repeat 3653..3689 CDD:293791
WD40 repeat 3697..3736 CDD:293791
WD40 repeat 3774..3810 CDD:293791
ATS1 4023..4359 CDD:444065
HECTc 4497..4865 CDD:238033
Blue background indicates that the domain is not in the aligned region.

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