DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7420 and herc1

DIOPT Version :10

Sequence 1:NP_001259871.1 Gene:CG7420 / 33332 FlyBaseID:FBgn0031344 Length:388 Species:Drosophila melanogaster
Sequence 2:XP_017947876.1 Gene:herc1 / 100493988 XenbaseID:XB-GENE-1002062 Length:4854 Species:Xenopus tropicalis


Alignment Length:405 Identity:102/405 - (25%)
Similarity:170/405 - (41%) Gaps:72/405 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EVYAWGANSHGQLGLGFESELCMTPQRVAKCSFAPAQVRLIRGGGGHVLILDTSGRIHACGWNNR 66
            :|:.|||..||||.....:  .|.|....  ||:.||..:.  |.....::..:|.:.|||..:.
 Frog  3991 DVFLWGAGRHGQLAEAGRN--VMIPSGAG--SFSQAQQVIC--GQNCTFVIQANGTVLACGEGSY 4049

  Fly    67 GQLGLDSTEECHSEFKMIPTEYFGDVPVETI-SCGWD-ISGAITLTKRLFVWGSNAFQQLGICQR 129
            |:||..::::.|  ...:.:...|.|..:.: |||.| .|.|:|.:..:|.||...:.:||  ..
 Frog  4050 GRLGQGNSDDLH--VLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLG--HG 4110

  Fly   130 GFTAVRRPMPVKLPREEPAQRISFGLRHCAVLTQDNKIYVF-----GRLRIMDPPPIELDITATC 189
            .....|||..::..:.|...::|.|.:|.||:|.|.|::.|     |||.:.:....:|....|.
 Frog  4111 NSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4175

  Fly   190 LHRCNTVKIQVHNPNELRIVSISSGQNHMVLKCADLSETGGGSTKRILTLGDNKFGQ-----SNA 249
            |             ..|.|..::.|.||.:...||      ||.  :...||..:|:     |.|
 Frog  4176 L-------------EGLHIGQVACGLNHTLAVSAD------GSL--VWAFGDGDYGKLGLGNSTA 4219

  Fly   250 FQFEEDV--------RQLAVGWTHNAAVLKNNEILVWGRNCYGQLGMG---SFSEQQAIPTPLRL 303
            ....:.|        :::|.|...:.|:.|:..:..:|::....|..|   :.:..|.:|..|.:
 Frog  4220 KSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQLVPVLLGI 4284

  Fly   304 KLPEDQGPARIHMGAEHGLLRTTAGEVYTWGWNEHGNCGNNSTENLHPNSFTTATSEIVRRRSRI 368
            .:.:      |.:||||.|..:.:||||.||.|..|..|...|.::...:..||           
 Frog  4285 FIDD------IAVGAEHTLALSASGEVYAWGSNSEGQLGLGHTNHVREPTLVTA----------- 4332

  Fly   369 LLRDHRARNLTLSPC 383
             |:....|.::...|
 Frog  4333 -LQGKNIRQISAGRC 4346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7420NP_001259871.1 ATS1 3..348 CDD:444065 97/367 (26%)
herc1XP_017947876.1 ATS1 374..703 CDD:444065
RCC1 683..733 CDD:395335
SPRY_HERC1 2025..2182 CDD:293939
UBA_HERC1 2741..2779 CDD:270584
WD40 3359..3793 CDD:441893
WD40 repeat 3432..3466 CDD:293791
WD40 repeat 3471..3513 CDD:293791
WD40 repeat 3520..3565 CDD:293791
WD40 repeat 3576..3612 CDD:293791
WD40 repeat 3620..3646 CDD:293791
WD40 repeat 3663..3694 CDD:293791
WD40 repeat 3743..3769 CDD:293791
WD40 repeat 3785..3819 CDD:293791
ATS1 4023..4353 CDD:444065 89/369 (24%)
HECTc 4466..4834 CDD:238033
Blue background indicates that the domain is not in the aligned region.

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