DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5556 and pud1

DIOPT Version :10

Sequence 1:NP_608595.2 Gene:CG5556 / 33320 FlyBaseID:FBgn0031332 Length:299 Species:Drosophila melanogaster
Sequence 2:NP_593248.2 Gene:pud1 / 2543527 PomBaseID:SPAC4C5.01 Length:249 Species:Schizosaccharomyces pombe


Alignment Length:234 Identity:49/234 - (20%)
Similarity:104/234 - (44%) Gaps:21/234 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 CIFDLESAVFDTRHVYKRAVIELAASYNKIIPEAVLIKSGPM--ETAEMAELICRKCDLPVSWES 92
            |:||::..:.|:..:|.:....:...|.| .|..:.:|:..|  ..:..|:::....::|::.:.
pombe    11 CLFDMDGLLVDSETIYTKTTNLILDRYGK-DPLPISVKAQMMGRPGSAAAKVVIDWSNIPMTPQQ 74

  Fly    93 FRFQLNERTSDLIANPTLMPGVERLVTHLGRCCMGLGLITSCSESMYCTKIRDREDFFQNFSSVI 157
            |..:.....:...::...|||.|.|:.:|....:.:||.||.:.:.|..|....:..|:.|...:
pombe    75 FVDEQQVIRAKFWSSLKPMPGAESLINNLSNHGIDIGLATSSNTANYNMKTAHLKHIFEKFGKNV 139

  Fly   158 CADDADLKAP---KPEPDVYLIAMRRLGDA---------GPDCTLVFDGTPKGVQAATDARLPVV 210
            ...|....||   ||.||::|..:..:.::         .|...:.|:.:..||::|..|.:.|:
pombe   140 ITGDNPSIAPGRGKPFPDIWLKVLNLINESRKQRGLKALTPSQCIAFEDSIPGVKSAKAAGMHVI 204

  Fly   211 MLAEKDLPCC----WSELATLRLETLEEFDPAEFNMPPY 245
            .:.:..:...    .:|:...:.|||...  :||::..|
pombe   205 WVPDAAIKNLVGDQLNEIVDSQCETLPSL--SEFDINKY 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5556NP_608595.2 Haloacid Dehalogenase-like Hydrolases 40..249 CDD:473868 46/224 (21%)
pud1NP_593248.2 HAD_AtGPP-like 8..208 CDD:319831 42/197 (21%)

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