DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5440 and lwr

DIOPT Version :9

Sequence 1:NP_001285558.1 Gene:CG5440 / 33318 FlyBaseID:FBgn0031331 Length:169 Species:Drosophila melanogaster
Sequence 2:NP_001259833.1 Gene:lwr / 33226 FlyBaseID:FBgn0010602 Length:159 Species:Drosophila melanogaster


Alignment Length:158 Identity:56/158 - (35%)
Similarity:85/158 - (53%) Gaps:7/158 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 SNSAVKRIQKELDEITRDPPQYCSAGPKED-----NLYEWTSTIIGPADSVYENGIFKLDIFFPV 78
            |..|:.|:.:|.....:|.|....|.|.::     ||..|...|.|...:.:|.|::||.:.|..
  Fly     2 SGIAITRLGEERKAWRKDHPFGFVARPAKNPDGTLNLMIWECAIPGKKSTPWEGGLYKLRMIFKD 66

  Fly    79 EYPFAPPVVIFRTPIYHCNIHRLGFICLDILKEK--WSPALTISKILLSICSLLTDCNPKDPLMA 141
            :||.:||...|..|::|.|::..|.:||.:|.|:  |.||:||.:|||.|..||.:.|.|||..|
  Fly    67 DYPTSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNIKDPAQA 131

  Fly   142 KIGTEYLKNRAEHDKKARLWTKRYAKDE 169
            :..|.|.:||.|::|:.|...:..|..|
  Fly   132 EAYTIYCQNRLEYEKRVRAQARAMAATE 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5440NP_001285558.1 COG5078 19..168 CDD:227410 55/155 (35%)
UQ_con 25..162 CDD:278603 52/143 (36%)
lwrNP_001259833.1 UQ_con 8..152 CDD:395127 52/143 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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