DRSC/TRiP Functional Genomics Resources

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Protein Alignment a5 and Pebp1

DIOPT Version :10

Sequence 1:NP_476998.1 Gene:a5 / 33317 FlyBaseID:FBgn0011294 Length:210 Species:Drosophila melanogaster
Sequence 2:XP_063127302.1 Gene:Pebp1 / 29542 RGDID:62017 Length:214 Species:Rattus norvegicus


Alignment Length:197 Identity:48/197 - (24%)
Similarity:69/197 - (35%) Gaps:97/197 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LDEPPRELLRIKYDN-TIDIEEGKTYTPTELKFQP-RLDWNA-DPESFYTVLMICPDAPNRENPM 101
            :||||:..||:.|.. |:| |.||..|||::..:| .:.|:. ||...||:::..||||:|::|.
  Rat    17 VDEPPQHALRVDYGGVTVD-ELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPK 80

  Fly   102 Y---------------------------------------------------------------- 102
            :                                                                
  Rat    81 FRPVGGKVGRGYHPDILNLVEVPAGQGCIDLPGLQLVCSAGETASAPGMGSLGVQPSCVLVLPSV 145

  Fly   103 -----------------------------RSWLHWLVVNVPGLDIMKGQPISEYFGPLPPKDSGI 138
                                         |.|.|:||||:.|.||..|..:|||.|..||||:|.
  Rat   146 SSASCSPAVEDPRCTPPSFGAQSPCSLLCREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGK 210

  Fly   139 QR 140
            :|
  Rat   211 ER 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
a5NP_476998.1 PEBP_euk 47..192 CDD:176644 44/190 (23%)
Pebp1XP_063127302.1 None

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