DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment robo3 and tutl

DIOPT Version :9

Sequence 1:NP_608592.2 Gene:robo3 / 33314 FlyBaseID:FBgn0041097 Length:1342 Species:Drosophila melanogaster
Sequence 2:NP_001303307.1 Gene:tutl / 46015 FlyBaseID:FBgn0010473 Length:1536 Species:Drosophila melanogaster


Alignment Length:1508 Identity:314/1508 - (20%)
Similarity:496/1508 - (32%) Gaps:542/1508 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 IVFLLK---------WTHAQGSHPPRIVEHPIDTT-VPRHEPATLNCKAEGSPTPTIQWYKDGVP 62
            :|||.:         |.|.....|||....|.|.. |...:...|||:|:|:|||.|.||||..|
  Fly   229 VVFLNRDPKQHKNGTWFHLDVHAPPRFSVTPEDIIYVNLGDSIILNCQADGTPTPEILWYKDANP 293

  Fly    63 LKILPGSHRITLPAGGLF----FLKVVNSRRETDAGIYWCEAKNELGVARSRNATLQV---AVLR 120
            :.  |.      |..|:|    .|::...|.| |.|.|.|.|:|..|.. |..|.:.:   ||: 
  Fly   294 VD--PS------PTVGIFNDGTELRISTIRHE-DIGEYTCIARNGEGQV-SHTARVIIAGGAVI- 347

  Fly   121 DEFRLEPQNTRIAQGDTALLECAAPRGIPEPTVTWKKGGQKL----DLEGSKRVRIVDGGNLAIQ 181
               .:.|.|....:|:..:..|.|.......||.|.:.|..:    .||  .||.|...|:|.|.
  Fly   348 ---MVPPTNQTKLEGEKVIFSCEAKAMPGNVTVRWYREGSPVREVAALE--TRVTIRKDGSLIIN 407

  Fly   182 DARQTDEGQYQCIAKNPVGVRESSLATLKVHVKPYIIRGPHDQTVLEGASVTFPCRVGGDP-MPD 245
            ..:..|.|||.|...|.:|..:|:.|.|.|.....:...|..|.:....:....|.:...| :..
  Fly   408 PIKPDDSGQYLCEVTNGIGDPQSASAYLSVEYPAKVTFTPTVQYLPFRLAGVVQCYIKSSPQLQY 472

  Fly   246 VLWLRTASGGNMPLDR----------VSVLEDRSLRLERVTIADEGEYSCEADNVVGAITAMGTL 300
            |.|.:         |:          :.|:.:.||...||....:|:|:|...|..|...|.|.:
  Fly   473 VTWTK---------DKRLLEPYQMKDIVVMANGSLLFTRVNEEHQGQYACTPYNAQGTAGASGVM 528

  Fly   301 TVYA--PPKF-------IQRPASKSVELGADTSFECRAIGNPKPTIFWTIKNNSTLIFPGAPPLD 356
            .|..  ||.|       .||....|||:..|.   ..|.|..:|||.|                 
  Fly   529 DVLVRKPPAFTVEPETLYQRKVGDSVEMHCDA---LEAEGTERPTIKW----------------- 573

  Fly   357 RFHSLNTEEGHSI--------------LTLTRFQRTDKDLVILCNAMNEVASITSRVQLSLDSQE 407
                 ..:||..:              :|:...:|.|.. ...|...||||::.:..||.::..:
  Fly   574 -----QRQEGEQLTESQRNRIKISGGNITIENLRREDFG-YYQCVVSNEVATLMAVTQLVIEGTQ 632

  Fly   408 DRPPPIIISGPVNQTLPIKSLATLQCKAIGLP----------SPTISWYRDG-------IPVQPS 455
            .. .|..|:|...:     |..|||    .||          ..|| |:|:.       |.|.||
  Fly   633 PH-APYNITGKATE-----SSITLQ----WLPGYSGGSEYKQDYTI-WFREAGVNDWQTISVTPS 686

  Fly   456 SKLNITTS-------------GDLIISDLDRQQDQGLYTCVASSRAGKSTWSGFLRIELPTNPNI 507
            ....:|.:             |..::.|       |:.:.|.:.|..:...:....::..|.|..
  Fly   687 GSTQVTINGLASGTTYEFQVVGRNVLGD-------GMMSKVMTVRTLEDAPAAPRNVKAATQPPD 744

  Fly   508 KF---------------------------YRAPE-QTKCPSAPGQPKILNAT--ASALTIVWPTS 542
            .|                           |..|: :.|.|. ||.|:.::.|  ::...|.|.:.
  Fly   745 SFFQLMPDEADLLAYFDIYFHTDSRGTLVYSPPKLRVKGPK-PGPPRNVSVTEVSNGFLITWQSP 808

  Fly   543 -DKAGASSFLGYSVEMYCTNQSRTWIPIASRLSEPIFTVESLTQGAAYMFIVRAENSLGFSPPSP 606
             ::|....|  |:::.....|.:|......|..|..:.|::|..|..|.|.|.|.:...:.....
  Fly   809 LERAHIVKF--YTIKYRTDAQWKTLNRGQIRPEETQYLVKNLVGGRTYYFRVLANSEKSYESSDE 871

  Fly   607 ISEPITAGKLVGVRDGSESTGTSQLLLSDVETLLQANDVVELLEANASDSTTARLSWDIDSGQYI 671
            :..|:.|    .|:..:.:.|....:|..:..::.:...|::....                   
  Fly   872 VKFPVPA----RVKHKAITAGVVGGILFFIVAIILSVCAVKICNKR------------------- 913

  Fly   672 EGFYLYARELHSSEYKMVT---------------LLNKGQG-LSSCTVPGLAKASTYEFFLVPFY 720
                  .|.....|:.||.               |.|:..| :||..|| |.|           |
  Fly   914 ------KRRKQEKEFNMVACRITDARNIAANNHHLHNRSTGSISSGQVP-LKK-----------Y 960

  Fly   721 KSIVGKPSNSRRMRTLEDVPEAPPYGMEAIQFNRTSVFLKWLPPQPNRTRN--GILTSYNV---- 779
            |        ..|:.:|..:..|               .|.|:.| |:|..|  .|.:|.|:    
  Fly   961 K--------QTRISSLTAILIA---------------ILHWIWP-PDRCTNCHSIYSSPNLEDGD 1001

  Fly   780 -----------------VVKG---LDVHNTTRI-FKNMTIDAAAPTLLLANLTTGVTYYIAVAAA 823
                             .:.|   |||...::: :...|:::       .|:..           
  Fly  1002 EDDGGGGRRRSVSRIQRSLDGRFVLDVEGVSKLGYSQQTLES-------GNVDV----------- 1048

  Fly   824 TRVGVGPFSKPAVLRIDARTQSLDTGYTRYPISRDIADDFLT--QTWFIVLLGSIIAIIV----- 881
              |..|.|.: ....:..::.|.|.|:    :||   .:|:|  .:|...|:.|...:.:     
  Fly  1049 --VDGGLFER-RNSNVSQKSSSDDGGF----LSR---RNFITARASWRRPLVASSSQLSLQSAAD 1103

  Fly   882 ----FLLGAL--------------------VLFKRYQFIKQ--TSLGSLHGN-------HAIGTV 913
                ||.|.|                    |...|||.:.:  ||..:|:||       | |.|:
  Fly  1104 SARGFLQGLLKIGAKQSAVPPNSQSYFDEAVSGARYQNVLRPYTSSNNLYGNADRSRPLH-INTI 1167

  Fly   914 -----------------RKFPTLP-----------LNGGGAVGAGGSN----STA----AAGQSG 942
                             |.|.:.|           |:.||: ||..::    ||.    :|.:|.
  Fly  1168 SGSLSQQQQLYTPSRISRIFSSSPQQLQPHHQQLLLSSGGS-GAYPTHFSDLSTVYPPNSAERSS 1231

  Fly   943 HGLWIDPTSGVWRQAAGGGNPGGVGSCTTKEQLPGY--AQATAQQGQQPTLLPDYERLSPLNMPD 1005
            |.|     |..:|..:              ::||..  .|...::.||....|..:...||.:| 
  Fly  1232 HNL-----SSRYRYYS--------------QELPSLRTIQEETRRQQQQKQHPLEDHFVPLQLP- 1276

  Fly  1006 YAEVACSTFKSPTHGAPPMGGGGGGQSASLYDSCGAYATTN---VVANVKLYQNRY--------- 1058
                           :||       ...|.|.|..:|....   ...:.:|:.||.         
  Fly  1277 ---------------SPP-------SWRSYYQSQASYRPRTRWYPRHHSRLFSNRQQQHEMLSPL 1319

  Fly  1059 -----------------ATKPNQSSGS-----NNNNHQG--NDYQSTGMYSAPP-----SAHYGC 1094
                             |:..::||.|     |.:||.|  ::::....|.|||     |.::| 
  Fly  1320 PQLNLNLRNSMNPGGLEASPESRSSSSGFGSKNTSNHPGSTSEWRLLPPYRAPPSPPKHSGYFG- 1383

  Fly  1095 LEPKQQQQQQQPN---------------------LMTTSTASTAILTNSPAKVKKINITENKMDQ 1138
               .||.|.|.|:                     :...:.|:.:.|..:|..|        .:..
  Fly  1384 ---GQQAQGQTPHGSYSYPRATTPPYTMAHWLEMISRLNAATDSNLPKAPCPV--------DVGS 1437

  Fly  1139 LEGKSERTNPFNQQQQLLLASNALKQGLGAYANT------TLAAQMAS--------GGGAGTLRR 1189
            ::|..|    |:.......||:.|::.|..:.:|      ||.....|        ||||   |:
  Fly  1438 VDGHYE----FDPATPTPSASSMLREDLNLHIDTHPYHHHTLGPLSGSLLHSHAPYGGGA---RK 1495

  Fly  1190 QRQ-PKTLYKSEN 1201
            ||. |..|.:.:|
  Fly  1496 QRSLPAHLPRYDN 1508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo3NP_608592.2 Ig 22..117 CDD:299845 36/102 (35%)
I-set 23..116 CDD:254352 35/97 (36%)
I-set 122..211 CDD:254352 27/92 (29%)
Ig 125..211 CDD:299845 27/89 (30%)
I-set 215..302 CDD:254352 19/97 (20%)
Ig 232..302 CDD:299845 17/80 (21%)
I-set 306..401 CDD:254352 24/115 (21%)
Ig 320..411 CDD:299845 19/104 (18%)
I-set 412..492 CDD:254352 23/109 (21%)
IGc2 429..489 CDD:197706 19/89 (21%)
FN3 519..612 CDD:238020 22/95 (23%)
FN3 644..735 CDD:238020 17/106 (16%)
fn3 743..832 CDD:278470 17/115 (15%)
tutlNP_001303307.1 V-set 137..250 CDD:284989 5/20 (25%)
IG_like 137..229 CDD:214653 314/1508 (21%)
I-set 253..341 CDD:254352 35/97 (36%)
IGc2 268..331 CDD:197706 27/71 (38%)
I-set 346..437 CDD:254352 28/96 (29%)
Ig 349..437 CDD:299845 27/89 (30%)
Ig 459..530 CDD:299845 17/79 (22%)
IG_like 549..628 CDD:214653 22/104 (21%)
IGc2 551..617 CDD:197706 17/91 (19%)
FN3 633..725 CDD:238020 22/109 (20%)
FN3 786..874 CDD:238020 20/89 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452280
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.