DRSC/TRiP Functional Genomics Resources

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Protein Alignment robo3 and plum

DIOPT Version :9

Sequence 1:NP_608592.2 Gene:robo3 / 33314 FlyBaseID:FBgn0041097 Length:1342 Species:Drosophila melanogaster
Sequence 2:NP_001163744.1 Gene:plum / 43197 FlyBaseID:FBgn0039431 Length:1298 Species:Drosophila melanogaster


Alignment Length:1479 Identity:288/1479 - (19%)
Similarity:460/1479 - (31%) Gaps:551/1479 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 RIVEHPID--TTVPRHEPATLNCKAEGSPTPTIQ--------WYKDGVPLKILPGSHR------- 71
            :|.:|.:.  |....|.|..|.|....:|....|        ||::.|.::.:  |:|       
  Fly    56 QIQKHAVTRLTISKPHSPYYLPCIPILTPYNHDQDNQPIYCSWYRNDVVVEQV--SYRKNDFFIY 118

  Fly    72 ----ITLPAGGLFFLKVVNSRRETDAGIYWCEAKNELGVARSRNATLQVAVLRDEFRLEPQNTRI 132
                :.||.            .|..:|.|:|:.:.:.....|...|::..||:..|..:.|...|
  Fly   119 DNGTLRLPT------------NEKASGEYYCKIEWDESAVISDRITVEYPVLKRLFPGQQQAANI 171

  Fly   133 AQGDTALLECAAP-RGIPEPTVTWKKGGQKLDLEGSKRVRIVDGGNLAIQDARQTDEGQYQCIAK 196
            :..:...|..:.| ..:|....:|..|...|..:.|  ..|:..|.|.::..|....|:|:|:|:
  Fly   172 SALENKPLVLSCPFLSVPAARFSWYFGNDSLTNDNS--ALILTNGTLILRHLRLEQAGKYKCVAQ 234

  Fly   197 NPVGVRESSLATLKVHVKPYIIRGPHDQTVLEGASVTFPCRVGGDPMPDVLWLRTASGGNMPLDR 261
            |....:.......::.|:|              ...||                      .|.:.
  Fly   235 NTFASKTHRQFIWQLQVEP--------------KDATF----------------------YPKNE 263

  Fly   262 VSVLEDRSLRLERVTIADEGEYSCEADNVVGAITAMGTLTVYAPPKFIQRPASKSVELGADTSFE 326
            ..:.|         |...|.:          .:.|....||:.|             .|.....:
  Fly   264 AGITE---------TAVSEAQ----------LLPAFQNATVFVP-------------AGGSVLLQ 296

  Fly   327 CRAIGNPKPTIFWTIKNNSTLIFPGAPPLDRFHSLNTEEGHSILTLTRFQRTDKDLVILCNAMNE 391
            |.|:.:..| |.|.::          ||                        :..:|.|.|  |.
  Fly   297 CHAVADFVP-IVWYLQ----------PP------------------------NNKMVRLSN--NS 324

  Fly   392 VA-SITSRVQLSLDSQEDR------------------PPPIIISGPVNQTLPIKSLATLQCKAIG 437
            || |||:   .|:...|.|                  ||.|:...|| :.:.|....||.|:|.|
  Fly   325 VAYSITN---ASIARHEGRYSCITPLETQNFQVIVTTPPRIVSRLPV-EVVYIGLSRTLTCRAEG 385

  Fly   438 LPSPTISWYRDGIPVQPSSKLNITTSGDLIISDLDRQQDQGLYTCVASSRAGKSTWSGFLRIEL- 501
            .|.|:|:||.:|:.:. ||.....:..:|.:...| .:::|:|.|||.:.||:.:.:|.||... 
  Fly   386 HPEPSITWYHNGVHLN-SSYTRYISGNELHVHSFD-SKEEGIYQCVARNVAGEDSATGELRFNRQ 448

  Fly   502 --PTNP--NIKFYRAPEQTKCPSAPGQPKILNATASALTIV--------------WPTSD--KAG 546
              ..||  ||:.|           |.....:|.|..:.|:.              |.:..  |..
  Fly   449 LEEVNPLQNIRCY-----------PHSFHSINITFDSRTLTSMFVVYIVRNNPHSWTSFSPMKLN 502

  Fly   547 ASSFLGYSVE-------------MYCTNQSR--TWIP----IASRLSEPIFTVESLTQGAAYMFI 592
            .:|::..|.:             ::.|.:.|  |.:|    ::|..|.|   |...|||.....|
  Fly   503 QTSYVVISTDLPVYEPFALITRVLFPTTEVRTGTLVPQQMILSSLRSTP---VTCCTQGLMLRPI 564

  Fly   593 V------------RAENS----LGFS------PPSPISEPITAGKLVGVRDGSES-----TGTSQ 630
            .            :.||.    |.||      .|:.:......|.|..|.:.::.     |....
  Fly   565 AVGNDTFVKWSQGQLENKKYFILQFSINHTHPHPAQLLNGSLQGTLTSVEEKADQVRHHLTEIQP 629

  Fly   631 LLLSDVETLLQ--------ANDVVEL------LEANASDS-----------------TTAR---- 660
            |..|...|:|:        .:|.:||      |..:||.:                 ||..    
  Fly   630 LNQSAAATVLRNVEHEDNVVDDTLELEDDIFSLVVDASVTGILLQRFTRIKMRVLIITTENEFLG 694

  Fly   661 -----LSWDI----DSGQYIEGFYLYARELHSSEYKMVTLLNKGQGLSSCT-------------- 702
                 :.|.|    .|.|....|.|..||..:..:|.:..||:...|...|              
  Fly   695 QDFRYVQWKIIENGTSEQSNMPFRLVTRESRALAFKFLDSLNETCVLECHTEIQAQMSLPSQDPK 759

  Fly   703 ------------VPGLAKASTYEFFLVP-----FYKSI--------VGKPSNSRRMRTLEDVPEA 742
                        |.||...:.|......     ||..|        .|..|||:.::        
  Fly   760 CQDRNIANSLLLVTGLKPDTRYNLHFYNCKTRIFYGDIDEKTEQDPPGTISNSKLIK-------- 816

  Fly   743 PPYGMEAIQFNRTSVFLKWLPP-QPNRTRNGILTSYNVVVKGLDVHNTTRIFKNMTIDAAAPTLL 806
                       :..:.|.|.|| .|    ||.:..|::               ..::|       
  Fly   817 -----------QNGLKLMWEPPINP----NGRVHHYDI---------------RWSLD------- 844

  Fly   807 LANLTTGVTYYIAVAAATRVG--VGPFSKPAVLRIDARTQSLDTGYTRYPISRDIADDFLTQTWF 869
                  .||:...|...|:..  ....|:.|.:.:..|... ||| ...|:..|:.::  ..||.
  Fly   845 ------NVTHEAIVKECTKCSYKFPNVSETAKIHVAVRVMG-DTG-AGAPMYFDMINN--NHTWL 899

  Fly   870 I-------------VLLGSIIAI-IVFLLGALVLFKRYQFIKQTSLGSLHGNHAIGTVRKFPTLP 920
            .             :.:||:::| .|||.|..::|::..| |..:.|..|    :.|    || .
  Fly   900 KEESESSHSEVYSGIAIGSLLSIACVFLFGLFIIFQQRNF-KARAQGPTH----LTT----PT-D 954

  Fly   921 LNGGGAVGAGGSNSTAAAGQSGHGLWID--------PTS---------------------GVWRQ 956
            :|.|....|.|....:|.|.||..|..|        |.|                     .|...
  Fly   955 INFGNLSSASGMPGDSAGGLSGGTLQQDCHEMQTLIPRSRYHIELLPEHSLEYQTSTAAVAVVHL 1019

  Fly   957 AAGGGNPG---------------GVGSCTTKEQLP--GYAQATAQQGQ-QPTLLPDYE------R 997
            |.|.|:..               |:.......|||  |....:.::.. |..:|.:.:      |
  Fly  1020 ANGNGSVQVARRSDQDGAAQGDLGIAGVHNLSQLPLCGVGGTSPERKTVQDAMLQEAKAFYIPYR 1084

  Fly   998 LSPLNMPDYAEVACSTFKS-------------PTHGAP---------PMGGGGGG---------Q 1031
            .:|.|     .||.|:.|.             |.:..|         .:||||.|         :
  Fly  1085 HTPPN-----AVALSSSKQCAVPSGSELEVIVPPNSLPLVTTMPGLGVVGGGGSGGGGVGGSSRR 1144

  Fly  1032 SASLYDSCGAYATTNVVANVKLYQN--RYATKPNQSSGSNNNNHQGNDYQSTGMYSAPPSAHYGC 1094
            |.|| .|..|.:::|..:..:.:.|  |:         ||:|:         |:|..........
  Fly  1145 SGSL-SSSSASSSSNGSSKKQFHTNFVRH---------SNSND---------GIYLLAEEEAAAT 1190

  Fly  1095 LEPKQQQQQQQPNLMTTSTASTAILTNS---PAKVKK-----INITEN-----KMDQLEGKSERT 1146
            |.|..:::.           :...|||.   ||.|.|     .|.|.|     ...|....::..
  Fly  1191 LTPTSEREY-----------AAVCLTNGFKLPADVAKSGGGTYNTTNNNNSSTNTSQKSATAKER 1244

  Fly  1147 NPFNQQQQLLLASNALKQGLGAYANTTL---AAQMASGGGAGTLRRQRQ 1192
            .|......:..:.||.|......|:..:   :|...|...|..:.|:.|
  Fly  1245 QPRGNGNPISFSHNACKVPANGPASVNVNHSSAVKQSWPAATVVHRRAQ 1293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo3NP_608592.2 Ig 22..117 CDD:299845 22/113 (19%)
I-set 23..116 CDD:254352 22/112 (20%)
I-set 122..211 CDD:254352 19/89 (21%)
Ig 125..211 CDD:299845 18/86 (21%)
I-set 215..302 CDD:254352 8/86 (9%)
Ig 232..302 CDD:299845 7/69 (10%)
I-set 306..401 CDD:254352 17/95 (18%)
Ig 320..411 CDD:299845 20/109 (18%)
I-set 412..492 CDD:254352 26/79 (33%)
IGc2 429..489 CDD:197706 20/59 (34%)
FN3 519..612 CDD:238020 26/149 (17%)
FN3 644..735 CDD:238020 32/165 (19%)
fn3 743..832 CDD:278470 13/91 (14%)
plumNP_001163744.1 IG_like 170..241 CDD:214653 17/72 (24%)
IGc2 175..235 CDD:197706 15/61 (25%)
IG_like 284..356 CDD:214653 23/124 (19%)
I-set 360..443 CDD:254352 28/85 (33%)
IGc2 378..435 CDD:197706 20/58 (34%)
FN3 804..886 CDD:238020 23/134 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452284
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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