DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment robo3 and Cont

DIOPT Version :9

Sequence 1:NP_608592.2 Gene:robo3 / 33314 FlyBaseID:FBgn0041097 Length:1342 Species:Drosophila melanogaster
Sequence 2:NP_649461.2 Gene:Cont / 40553 FlyBaseID:FBgn0037240 Length:1390 Species:Drosophila melanogaster


Alignment Length:1085 Identity:232/1085 - (21%)
Similarity:372/1085 - (34%) Gaps:284/1085 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PRIVEHPIDTTVPRHE-----PATLNCKAEGSPTPTIQWYKDGVP------LKILP-GSHRITLP 75
            |..|:.|.|||...::     ..||:|.|.|.|||:..||::...      .||.| ...|.|:.
  Fly   362 PYFVKQPNDTTFDVNKNRLINDVTLSCLANGYPTPSYTWYREVYVDDRLEYQKIDPLAQDRYTIS 426

  Fly    76 AGGLFFLKVVNSRRETDAGIYWCEAKNELGVARSRNATLQVAVLRDEFRLE--PQNTRIAQGDTA 138
            .|.|.   :...::..|.|.|.|.|:|:.|..||.:|.|....:. ||.|:  .:.:.:..|.: 
  Fly   427 GGNLI---IYEPKQALDQGAYHCVAENKFGRIRSESAHL
NFGFIM-EFNLKRSAETSEMNWGKS- 486

  Fly   139 LLECAAPRGIPEPTVTWKKGGQKLDLEGSKRVRIVDGGNLAIQDARQTDEGQYQCIAKN------ 197
             :.|..|:..|:....|.:......:|..:||.:...|.|........|...|.|..:.      
  Fly   487 -IFCDPPQHYPDVRYYWARDYFPNFVEEDQRVFVSRDGALYFSFIETVDRANYSCTVQTLVSDTG 550

  Fly   198 ------PVGVRESS--LATLKVHVKPYIIRGPHDQTVLEGASVTFPCRVGGDPMPDVLWLRTASG 254
                  |:.|..:|  .|.:..:..|.:.    .:..:.|..:...|...|.|:|...|.|.   
  Fly   551 RNGPFFPLR
VTPNSNYQALIFANTFPKVF----PEAPVAGDEIRLECMAFGYPIPSYNWTRQ--- 608

  Fly   255 GNMPLDR--VSVLEDRSLRLERVTIADEGEYSCEADNVVGAITAMGTLTVYAPPKFIQRPASKSV 317
             .:||.|  .::...|.|.::..|..|.|||||...|....:.....:.:...|:|.........
  Fly   609 -GLPLQRNAYTINYGRVLIIQNATTNDNGEYSCTITNPRKTLMKSIYINI
QMRPQFTIPLKDMIK 672

  Fly   318 ELGADTSFECRAIGNPKPTIFWTIKNNSTLIFPGAPPLDRFHSLNTEEGHSILTLTRFQRTDKDL 382
            :..:|.:|.|.|...|.....|  ..|:..:.|.....||:...:     ::||:...::...|.
  Fly   673 DYNSDVTFICEAFAIPDANYTW--YKNAERLDPANINRDRYIIQD-----NVLTIKFLEKDKDDA 730

  Fly   383 VILCNAMNEVASITSRVQLSLDSQEDRPPPIIISGPVNQTLPIKS--------LATLQCKAIGLP 439
            :..|.|.|::.:..|..||.:.|.:          |..:..|::|        ..|:.|.....|
  Fly   731 MYQCGAQNQLKTSFSSAQLRV
LSMK----------PSFKKHPLESEVYAVYNGNTTIVCDPEAAP 785

  Fly   440 SPTISWYRDGIPVQPSSKLNITTSGDLIISDLDRQQDQGLYTCVASSRAGKSTWSGFLRIELPTN 504
            .|...|.:||..:.......|..||.|.||...| .|:|:|||:||::||  |.....|:.:  .
  Fly   786 RPKFQWKKDGQVIGSGGHRRILPSGTLTISPTSR-DDEGIYTCIASNQAG--TDESHARVIV--L 845

  Fly   505 PNIKFYRAPEQT----------------------------------------------------- 516
            ..|:|...|.|.                                                     
  Fly   846 QEIRFIETPPQRIVSKEHDLIFLHCEAAFDELLDIAYVWKHNGEVLKNNHDGTGRIIVDWNRLTV 910

  Fly   517 -----------KC--------------------PSAPGQPKILNATASALTIVWPTSDKAGAS-- 548
                       :|                    |.|||..:::..:.:...|.|......|.:  
  Fly   911 HNTSMRDAGDYECVVKSAVNEISSKTSVSIEGAPGAPGGVQVIQISKTKAIIEWVDGSHNGRAIR 975

  Fly   549 --SFLGYSVEMYCTNQSRTWIPIASRL---------SEPIFTVESLTQGAAYMFIVRAENSLGF- 601
              :.||.      ||.:|||:.:::.:         |.....|.:||..:||.|.|.|.|.||. 
  Fly   976 YYNILGR------TNWNRTWVNVSTHVQAREVDRYTSRQQAEVVNLTPWSAYEFSVTAVNDLGIG 1034

  Fly   602 --SPPSPI-----SEPITAGKLVGVRDG--SESTGTSQLLL------------------------ 633
              |.||||     .:|..|.:.||...|  .:.|.|...||                        
  Fly  1035 TPSAPSPIYSTYEDKPYIAPRNVGGGGGKIGDLTITWDPLLPQEQHSHGIHYKVFWKLKGAIEWA 1099

  Fly   634 -----------------------------------------SDVETLLQANDVVELLE----ANA 653
                                                     |::..:..|.|:.::..    |.|
  Fly  1100 SDEIKKQDHMGVAVVNIPLNNYYTEYEVKVQAINSVGKGPESEIAVIHSAEDMPQVAPQKPIALA 1164

  Fly   654 SDSTTARLSWD-ID-SGQYIEGFYL-----YARELHSSEYKMVTLLNKGQGLSSCTVPGLAKAST 711
            .:||...::|. || |.:.|.|..:     |.:..|..|..:..|....:..:  .:.|| :..|
  Fly  1165 YNSTCFNVTWQPIDMSRENIRGKLIGHRLKYWKTTHQEEDSVYYLSRTTRNWA--LIVGL-QPDT 1226

  Fly   712 YEFFLVPFYKSIVGKPSNSR-RMRTLEDVPEAPPYGMEAIQFNRTSVFLKWLPPQPNRTRNGILT 775
            |.|..|..|.:....|.:.| ..||....|:.||..:.....|.::|.:.|....|::....: .
  Fly  1227 YYFVKVMAYNAAGEGPESERFEERTYRKAPQKPPSSVHVYGINPSTVRVVWRYVSPSQDEEPV-E 1290

  Fly   776 SYNVVVKGLDVHNTTRIFKNMTIDAAAPTL--LLANLTTGVTYYIAVAAATRVGVGPFSKPAVLR 838
            .|.|.:...|.:..|   .|.||......|  .:.|||.|.:|.:.|.|.:..|.|..|.| .|.
  Fly  1291 GYKVRIWESDQNMIT---ANNTIVPIGQKLESYINNLTPGKSYNMRVLAYSNGGDGRMSSP-TLH 1351

  Fly   839 IDARTQSLDTGYTRYPISRDIADDFLTQTWFIVLLGSIIAIIVFL 883
            ......:.:...||:..:.:.|          ::|.:::.|..||
  Fly  1352 FQMGKTTRNGANTRHGHNINTA----------LILSTLLLISTFL 1386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo3NP_608592.2 Ig 22..117 CDD:299845 34/105 (32%)
I-set 23..116 CDD:254352 34/104 (33%)
I-set 122..211 CDD:254352 20/104 (19%)
Ig 125..211 CDD:299845 18/101 (18%)
I-set 215..302 CDD:254352 21/88 (24%)
Ig 232..302 CDD:299845 19/71 (27%)
I-set 306..401 CDD:254352 19/94 (20%)
Ig 320..411 CDD:299845 20/90 (22%)
I-set 412..492 CDD:254352 26/87 (30%)
IGc2 429..489 CDD:197706 21/59 (36%)
FN3 519..612 CDD:238020 32/113 (28%)
FN3 644..735 CDD:238020 24/102 (24%)
fn3 743..832 CDD:278470 23/90 (26%)
ContNP_649461.2 CLECT 139..>223 CDD:214480
Ig 361..460 CDD:299845 32/100 (32%)
I-set 362..462 CDD:254352 33/102 (32%)
Ig 466..559 CDD:299845 17/95 (18%)
IG_like 584..657 CDD:214653 20/76 (26%)
IGc2 586..645 CDD:197706 19/62 (31%)
Ig 667..751 CDD:299845 19/90 (21%)
IG_like 676..751 CDD:214653 19/81 (23%)
IG_like 765..844 CDD:214653 26/81 (32%)
Ig 773..844 CDD:299845 25/73 (34%)
I-set 851..940 CDD:254352 3/88 (3%)
Ig 866..944 CDD:299845 1/77 (1%)
FN3 944..1043 CDD:238020 30/104 (29%)
FN3 1053..1146 CDD:238020 9/92 (10%)
fn3 1156..1244 CDD:278470 22/90 (24%)
fn3 1259..1346 CDD:278470 23/90 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452262
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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