DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment robo3 and boi

DIOPT Version :10

Sequence 1:NP_608592.2 Gene:robo3 / 33314 FlyBaseID:FBgn0041097 Length:1342 Species:Drosophila melanogaster
Sequence 2:NP_001096868.3 Gene:boi / 31229 FlyBaseID:FBgn0040388 Length:1105 Species:Drosophila melanogaster


Alignment Length:1333 Identity:269/1333 - (20%)
Similarity:423/1333 - (31%) Gaps:458/1333 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 IYWCEAKNELGVARSRNATLQVAVLRDEFRLEPQNTRIAQGDTALLECAAPRGIPEPTVTW--KK 157
            ||..:|.:    :.|..|| .:.||   |...|::....:||..:.||..  .:....:.|  ::
  Fly    18 IYTLQASD----SNSSVAT-TLGVL---FERAPESAVAPKGDEVVFECEL--NLKPDRLEWRFRR 72

  Fly   158 GGQK---LDLEGSKRVRIVDGGN-----LAIQDARQTDEGQYQCIAKNPVGVRESSLATLKVHVK 214
            |...   |.|..|....:..|.:     |.|..:.|| .|.|||:|....|...|:.|.|     
  Fly    73 GDSSEPYLYLRPSAGYNVTSGSDGLAWRLRIYVSAQT-AGDYQCVAWYGPGALASTPARL----- 131

  Fly   215 PYIIRGPHDQTVLEGASVTFPCRVGGDPM--------------------------PDVLWLRTAS 253
                           |.|:....||...|                          |..:|....:
  Fly   132 ---------------ALVSIALDVGQGSMGARSSIRWSVAPKNCLLIRCGSVISNPPAIWSFYRN 181

  Fly   254 GGNMPLDRVSVLEDRSLRLERVTIADEGEYSCEADN-VVG-------AITAMGTLTVYAPPKFIQ 310
            |..:|...:......:|.|:.||..|.|.|||.|.| :.|       .|......|...||.|:|
  Fly   182 GKKLPQSELLPGAAGALVLDTVTAKDAGNYSCVATNSITGDELRLPQTIELRVDYTDRTPPYFLQ 246

  Fly   311 RPASK-SVELGADTSFECRAIGNPKPTIFWT-------IKNNSTLIFPGAPPLDRFHSLNTEEGH 367
            ||..: |...|.....||..:|:|:|.:.|:       ..|.||::..|                
  Fly   247 RPPIEYSARPGETVVLECPGVGSPRPRVIWSSPNVVEIYNNRSTILSYG---------------- 295

  Fly   368 SILTLTRFQRTDKDLVILCNAMNEVA-SITSRVQLSLDSQEDRPPPIIISGP----VNQTLPIKS 427
              |.:|..:..|:...| |...|.:| .|...::||:..:     |.|:.||    .|::.|:  
  Fly   296 --LQITDVKPEDQGSYI-CMLDNGIAPPIDHTIKLSVLQR-----PTILRGPAATLTNESNPL-- 350

  Fly   428 LATLQCKAIGLPSPTISWYRDGIPVQPSSKLNITTSGDLIISD----LDRQQDQ--GLYTCVASS 486
              .|.|.|.|.|.|.|.|..:|        .:.|...:.::.:    |.|.|.:  |:..|.|.:
  Fly   351 --LLDCSASGNPQPDIYWLING--------EDATKDPEAVVDNRSLQLKRVQKRHAGVVQCFAKN 405

  Fly   487 RAGKSTWSGFLRI--------------ELPTNP------------------NIKFYRAPEQTKCP 519
            ..|:::....||:              |:|..|                  |....|..:.:..|
  Fly   406 ILGETSEGNILRVNPLEITGEDDEPLGEVPVWPVHESNTGMGTSSTSGGSKNKSGRRKFKASMVP 470

  Fly   520 SAPGQPKILNATASALTIVWPTSDKAGAS-SFLGYSVEMY--CTNQSRTWIPIASRL-------S 574
              |.:|.:...:..::.:.|.....:|.. :|......|.  ..|:.:.|...:..:       |
  Fly   471 --PSRPNVTRLSDESVMLRWSVPQNSGLQITFFKVQYRMLGDGKNRRKNWQTTSDNIPYGNAHGS 533

  Fly   575 EPIFTVESLTQGAAYMFIVRAEN-----SLGFSPPSPISEPI---TAGK-----LVGV------R 620
            .|       .||.::.   ||.|     .:| :||...:..:   ||||     :|.|      :
  Fly   534 GP-------GQGNSHW---RARNRDREYEMG-NPPKNFTSSVTGLTAGKYYRFRIVAVYSNNDNK 587

  Fly   621 DGSES------TGTSQLLLSDVETLLQANDVVELLEANASDSTTARLSWDIDS---GQYIEGFYL 676
            :|:.|      .|||:..|          .|.||.|......:...|.|.:.|   .:.|:|:|.
  Fly   588 EGNTSLKFFLQNGTSKSNL----------PVPELREVETLSESAVVLHWSLVSSTQNEDIDGYYA 642

  Fly   677 YARELHS-SEYKMVTLLNKGQGLS-SCTVPGLAKASTYEFFLVPFYKSIVGKPSNSRRMRTLEDV 739
            |.|...| :||...|:   ..|:| |..:..|...:.|||.|..|......:.|..|:.|| ...
  Fly   643 YYRPADSAAEYLKATV---DGGMSRSFKIDLLRPGTPYEFKLQSFNSDAASEFSAIRQART-RKT 703

  Fly   740 PEAPPYGMEAIQFNRTSVFLKWLPPQPNRTRNGILTSYNVVVKGLDVHNTTRIFKNMTIDAAAPT 804
            .|.|                                                             
  Fly   704 HEQP------------------------------------------------------------- 707

  Fly   805 LLLANLTTGVTYYIAVAAATRVGVGPFSKPAVLRIDARTQSLDTGYTRYPISRDIADDFLTQTWF 869
                          |.::||.|       ||...::....||      ||:....|.        
  Fly   708 --------------ASSSATPV-------PANKAVEQHQNSL------YPLIAGAAG-------- 737

  Fly   870 IVLLGSIIAIIVFLLGALVLFKR-----------------YQFIKQTSLGSLHGNHAIGTVRKFP 917
                |.|:.:|..|:..|.|.:|                 ..|:....|| :.|:|..|.||:  
  Fly   738 ----GGILLLIASLVVCLCLKRRENSQPEDENKPQLEHIQADFVTSAVLG-VGGHHKSGDVRR-- 795

  Fly   918 TLPLNGGGAVGAGGSNSTAAAGQSGHGLWIDPTSGVWR------QAAGGGNPGGVGSCTTKEQLP 976
               ||  |.:..........|.::..    |....|..      .|.|.||    |:|..::...
  Fly   796 ---LN--GVIPRMNITPNPLAQETAS----DKNRNVMELRFLPPLANGNGN----GNCMARDLAL 847

  Fly   977 GYAQATAQQGQQ--------PTL-------LPDYERLSPLNMP-----DYAEVACSTFKSPTHGA 1021
            ..:.|..||.:.        |.:       |...:....||:|     :..:...:..::|:...
  Fly   848 ERSNAEEQQDEDGHEDEKGLPAVASSSCETLEACDAAIKLNLPQKHDQEQLDAPNAVLEAPSKPL 912

  Fly  1022 PPM---GGGGGGQSASLYDSCGAYATTNVVANVKLYQN-RYATKPNQSSGSNNNNHQGNDYQSTG 1082
            ||:   ...|.||:                 |..|:|| .:..:|....|:....|:..||....
  Fly   913 PPLPKKPANGAGQN-----------------NSGLHQNGLHHAQPYHPPGTPTLMHKRLDYHQQP 960

  Fly  1083 MYSAPPSAHYGCLEPKQQQQQQQPNLMTTSTA---------STAILTNSPAKVKKINITENKMDQ 1138
            ....|.||:|      ||....||:.|...:.         .....|.:|.::..:.        
  Fly   961 PPVPPHSAYY------QQAPTHQPSPMMERSVRGHQQPGGFHMEEGTPTPTRIPSLR-------- 1011

  Fly  1139 LEGKSERTNPFNQQQQLLLASNALKQGLGAYANTT---------LAAQMASGGG-------AGTL 1187
               :..||   :..||:..:.:.|..||..:.|..         |.......||       .|:.
  Fly  1012 ---RQRRT---SGNQQVHNSHSNLNIGLSHHNNNNNNLPPHHQHLHHHPGHPGGLVGIPIVPGSP 1070

  Fly  1188 RRQRQPKTLYKSENNILGKSGLRQNTMNASVGA 1220
            |.||.|    .....::.::.|..:|.|.|.|:
  Fly  1071 RVQRSP----MPSRAMIKRTRLGSHTDNISSGS 1099

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
robo3NP_608592.2 Ig 23..117 CDD:472250 6/21 (29%)
Ig strand B 40..44 CDD:409353
Ig strand C 53..57 CDD:409353
Ig strand E 77..81 CDD:409353
Ig strand F 95..100 CDD:409353 2/4 (50%)
Ig strand G 109..112 CDD:409353 1/2 (50%)
Ig 124..211 CDD:472250 24/96 (25%)
Ig strand B 138..142 CDD:409353 0/3 (0%)
Ig strand C 152..156 CDD:409353 1/5 (20%)
Ig strand E 176..180 CDD:409353 1/8 (13%)
Ig strand F 190..195 CDD:409353 3/4 (75%)
Ig strand G 204..207 CDD:409353 1/2 (50%)
Ig 218..302 CDD:472250 22/117 (19%)
Ig strand B 232..236 CDD:409353 1/3 (33%)
Ig strand C 245..249 CDD:409353 0/3 (0%)
Ig strand E 268..272 CDD:409353 1/3 (33%)
Ig strand F 282..287 CDD:409353 3/4 (75%)
Ig strand G 295..298 CDD:409353 0/2 (0%)
Ig 307..403 CDD:472250 25/104 (24%)
Ig strand B 323..327 CDD:409353 0/3 (0%)
Ig strand C 336..340 CDD:409353 0/3 (0%)
Ig strand E 366..372 CDD:409353 1/5 (20%)
Ig strand F 382..388 CDD:409353 2/5 (40%)
Ig strand G 396..399 CDD:409353 0/2 (0%)
Ig 413..497 CDD:472250 22/93 (24%)
Ig strand B 429..433 CDD:409353 1/3 (33%)
Ig strand C 442..446 CDD:409353 1/3 (33%)
Ig strand E 464..468 CDD:409353 0/3 (0%)
Ig strand F 479..484 CDD:409353 1/4 (25%)
Ig strand G 492..495 CDD:409353 0/2 (0%)
FN3 519..612 CDD:238020 19/110 (17%)
FN3 644..735 CDD:238020 27/95 (28%)
fn3 743..832 CDD:394996 5/88 (6%)
boiNP_001096868.3 IG_like 42..131 CDD:214653 23/91 (25%)
Ig 161..221 CDD:409353 15/59 (25%)
Ig strand B 161..165 CDD:409353 0/3 (0%)
Ig strand C 175..179 CDD:409353 1/3 (33%)
Ig strand E 196..200 CDD:409353 1/3 (33%)
Ig strand F 210..215 CDD:409353 3/4 (75%)
Ig 242..315 CDD:472250 22/91 (24%)
Ig strand B 260..264 CDD:409353 0/3 (0%)
Ig strand C 273..277 CDD:409353 0/3 (0%)
Ig strand E 294..298 CDD:409353 2/21 (10%)
Ig strand F 308..313 CDD:409353 2/5 (40%)
Ig <352..408 CDD:472250 16/63 (25%)
Ig strand C 363..367 CDD:409353 1/3 (33%)
Ig strand E 384..388 CDD:409353 0/3 (0%)
Ig strand F 398..403 CDD:409353 1/4 (25%)
FN3 <448..>700 CDD:442628 60/277 (22%)
FN3 613..700 CDD:238020 24/89 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.