DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tgt and qtrt1

DIOPT Version :10

Sequence 1:NP_608585.1 Gene:Tgt / 33307 FlyBaseID:FBgn0031321 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_989090.1 Gene:qtrt1 / 394694 XenbaseID:XB-GENE-6076185 Length:396 Species:Xenopus tropicalis


Alignment Length:387 Identity:236/387 - (60%)
Similarity:297/387 - (76%) Gaps:1/387 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LTYKVVAECSVSKARAGLMTLRHSEVNTPVFMPVGTQGTLKGIVPDQLIELNCQILLGNTYHLGL 73
            |.::|:|||.|:||||....|.|..|.||||||||||||:||:..|||..|.|:|.||||||||:
 Frog     9 LVHRVLAECPVTKARACEFRLPHGPVKTPVFMPVGTQGTMKGVTADQLRNLGCEICLGNTYHLGM 73

  Fly    74 RPGIETLKKAGGLHKFMGWPRAILTDSGGFQMVSLLQLAEIDEHGVNFRSPFDNSQCMLTPEHSI 138
            |||.|.:|||||||.||.|.|.:||||||||||||::|:::.|.||.||||:|..:.:||||.||
 Frog    74 RPGPEIMKKAGGLHGFMNWGRNLLTDSGGFQMVSLVELSKVTEEGVQFRSPYDGKEILLTPEKSI 138

  Fly   139 EIQNAIGGDIMMQLDDVVKTTTTGPRVEEAMERTIRWVDRCIEAHARDDDQSLFPIVQGGLDVPL 203
            |||||:|.||||||||||.:|.|||||||||.|:|||:||||.|::..|.|:||.|:|||||..|
 Frog   139 EIQNALGSDIMMQLDDVVSSTITGPRVEEAMHRSIRWLDRCIAANSNPDRQNLFAIIQGGLDAEL 203

  Fly   204 RQRCVSALMERQVRGFAVGGLSGGESKHDFWRMVDVCTGYLPKDKPRYLMGVGFAADLVVCVALG 268
            |::|:..:.:|.|.|||:|||||||.|..|||||.:.|.:||:||||||||||:|.|||||||||
 Frog   204 RRKCLQEMTKRDVPGFAIGGLSGGEEKDHFWRMVTLSTDHLPRDKPRYLMGVGYATDLVVCVALG 268

  Fly   269 IDMFDCVFPTRTARFGCALVDSGQLNLKQPKYKLDMEPIDKDCDCSTCRRYTRSYLHHIATNESV 333
            .|||||||||||||||.|||..|.|.||..::..|.:||||:|||.||:||:|:|::.:..:::.
 Frog   269 CDMFDCVFPTRTARFGSALVPWGSLQLKNKQFAKDFQPIDKNCDCPTCQRYSRAYINALFKSDTA 333

  Fly   334 SSSLLSIHNVAYQLRLMRSMREAIQRDEFPQFVADFMARHFKA-EPVPAWIREALSAVNIQL 394
            :...::|||:||||.||||:|::|.:..|||||.|||...:.: :..|.|..:||..|.|.|
 Frog   334 AMHHITIHNIAYQLNLMRSVRDSILQGRFPQFVQDFMRTMYSSRDKYPQWAVDALETVGITL 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TgtNP_608585.1 TGT 20..375 CDD:460299 223/354 (63%)
qtrt1NP_989090.1 TGT 21..375 CDD:460299 223/353 (63%)
RNA binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03218 254..260 4/5 (80%)
RNA binding, important for wobble base 34 recognition. /evidence=ECO:0000255|HAMAP-Rule:MF_03218 278..282 3/3 (100%)

Return to query results.
Submit another query.