DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tgt and qtrt1

DIOPT Version :10

Sequence 1:NP_608585.1 Gene:Tgt / 33307 FlyBaseID:FBgn0031321 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_957304.1 Gene:qtrt1 / 393985 ZFINID:ZDB-GENE-040426-1625 Length:400 Species:Danio rerio


Alignment Length:392 Identity:239/392 - (60%)
Similarity:299/392 - (76%) Gaps:1/392 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SHIPPLTYKVVAECSVSKARAGLMTLRHSEVNTPVFMPVGTQGTLKGIVPDQLIELNCQILLGNT 68
            |...||..::||||.||||||..:||.|..||||||||||||||:|||..|||.:|:|||.||||
Zfish     8 SSAAPLALRIVAECPVSKARACSLTLPHCAVNTPVFMPVGTQGTMKGITADQLEDLDCQICLGNT 72

  Fly    69 YHLGLRPGIETLKKAGGLHKFMGWPRAILTDSGGFQMVSLLQLAEIDEHGVNFRSPFDNSQCMLT 133
            ||||:|||.:.::||.|||.||.|.|.:||||||||||||::|:|:.|.||.||||:|..:.:||
Zfish    73 YHLGMRPGPDLIEKANGLHGFMKWRRNLLTDSGGFQMVSLVELSEVTEEGVTFRSPYDGKEILLT 137

  Fly   134 PEHSIEIQNAIGGDIMMQLDDVVKTTTTGPRVEEAMERTIRWVDRCIEAHARDDDQSLFPIVQGG 198
            ||.||.|||::|.||||||||||.:|..||||||||.|::||:||||.|:...|.|:||.|:|||
Zfish   138 PEQSIAIQNSLGSDIMMQLDDVVSSTVKGPRVEEAMHRSVRWLDRCIAANKNPDRQNLFAIIQGG 202

  Fly   199 LDVPLRQRCVSALMERQVRGFAVGGLSGGESKHDFWRMVDVCTGYLPKDKPRYLMGVGFAADLVV 263
            ||..||:.|:..:.:|.|.|||:|||.|||.|.|||:||.:.|.:||::|||||||||:|.||||
Zfish   203 LDAELRKACLKEMTKRDVPGFAIGGLGGGEEKDDFWKMVTLSTDHLPREKPRYLMGVGYAVDLVV 267

  Fly   264 CVALGIDMFDCVFPTRTARFGCALVDSGQLNLKQPKYKLDMEPIDKDCDCSTCRRYTRSYLHHIA 328
            |||||.|||||||||||||||.|||..|.|.|||.:|..|.:|||.||.|.||||::|:|||.:.
Zfish   268 CVALGCDMFDCVFPTRTARFGSALVPWGSLQLKQKQYAKDFQPIDPDCQCPTCRRHSRAYLHALF 332

  Fly   329 TNESVSSSLLSIHNVAYQLRLMRSMREAIQRDEFPQFVADFMARHF-KAEPVPAWIREALSAVNI 392
            .:::.:...::|||::|||.||||:|::|....||:||.:||.|.| .:...|:|..|||.:|||
Zfish   333 KSDTAAMHHITIHNISYQLSLMRSVRQSIIDQRFPEFVKEFMKRMFPSSSQYPSWAVEALQSVNI 397

  Fly   393 QL 394
            .|
Zfish   398 CL 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TgtNP_608585.1 TGT 20..375 CDD:460299 222/355 (63%)
qtrt1NP_957304.1 TGT 24..379 CDD:460299 221/354 (62%)
RNA binding. /evidence=ECO:0000255|HAMAP-Rule:MF_03218 258..264 4/5 (80%)
RNA binding, important for wobble base 34 recognition. /evidence=ECO:0000255|HAMAP-Rule:MF_03218 282..286 3/3 (100%)

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