DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4896 and SUA

DIOPT Version :9

Sequence 1:NP_608583.5 Gene:CG4896 / 33305 FlyBaseID:FBgn0031319 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_001190084.1 Gene:SUA / 824590 AraportID:AT3G54230 Length:1008 Species:Arabidopsis thaliana


Alignment Length:1172 Identity:264/1172 - (22%)
Similarity:409/1172 - (34%) Gaps:393/1172 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MD-SRYGHSFSGGNGNGSESGY-------RRYSRSRS---------------------------R 30
            || ||||......| |.:..||       .|:..|..                           :
plant     1 MDPSRYGRQQEWDN-NSAPEGYGTQHDPNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLPQ 64

  Fly    31 SRERSRDRN---EYRRRNS-------------RSRSRERSSHYRNDRSPDRDLYRDLINEDYE-D 78
            ||:|:.:.|   |.||:..             .|.:..|:.||| |...:|....|.. :||. :
plant    65 SRKRNYEENYPSELRRQEKPYIDSNYAADYYHDSEAGSRNGHYR-DHEHERSSRYDGC-DDYSCN 127

  Fly    79 QGNYNSRQNLDQRHGEDKYDRRHAD-SQGRRDHDSNYDKSG-----------QDMDKD-RDHRWK 130
            ..||.|:   :..|..|  |.|..| ...||.:||.|:::.           ||.::: ||..|.
plant   128 DNNYRSK---NYHHSRD--DGREKDYDYTRRSYDSEYERASVRDGSRKSRDPQDRERNSRDREWD 187

  Fly   131 NYDR------VSRERNHDDFDRGSERSSRSNDQRQFNNNGNSNSSS---SYRDREKERDRDRRCS 186
            :.||      .||||:.....|..:..|||..:.:|:.:.:....|   |||:...|.|.     
plant   188 SRDREWDKRCYSRERDESPHKRYEKSRSRSTGRGEFSRSRSPRGRSHGRSYREDSYEGDH----- 247

  Fly   187 SDEDSDMASEFRQRGAYNSGS-SVEPLNNIILFGLKKHVTEADIMGELIKVDLEPT-SIRVMRKQ 249
             ..:|:...|:..|  :|... |..|...:::.||....||.|:.  .|..:..|. .:||:|:|
plant   248 -WNESERRREYEDR--HNQDHFSATPSATVVVKGLSMKSTEEDLY--QILAEWGPLHHVRVIREQ 307

  Fly   250 QTGASRCFAFVEFKTVEEATRWMELTQ-----------------------GVLQLGDHRVTMQYS 291
            .:|.||.|||::|.||:.|...|:..:                       ||.:..:|.....|.
plant   308 NSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDGRKLMFHYSSQPTGRAGVSRRQEHASRRSYG 372

  Fly   292 HTR----ISDWTCIKCGASNFKRRFQCYMCNASRA-ESENALYG-----AGEGVDEISQILTKKI 346
            .:|    .:||.|..||..||.||..|:.||..:. :|.:|..|     ||:.:.|...  |..:
plant   373 GSRNMIVPTDWICTICGCINFARRTSCFQCNEPKTKDSPSADVGLSNSAAGKRISETGP--THVL 435

  Fly   347 MLRGLDALTNEEGVLTALQQRLPELAKTVSKVLVSRDALTNASRGICYLNFDTLIDSMNVFNGLT 411
            ::||||...:||.:.....:..|     :..:.:.||..|:.|||..:::|.::.|:        
plant   436 VVRGLDEDADEEMLRYEFSKHAP-----IKDLRLVRDKFTHVSRGFAFVHFYSVEDA-------- 487

  Fly   412 ALDPPLTLDDKTVIVTYCIDSENRQMMPAEGNFFRAGETAMSPSAITAAYTLADVPRLAEYSASV 476
                           |..:::.||..:...|...|..                       |:.||
plant   488 ---------------TKALEATNRTALERNGKILRVA-----------------------YAKSV 514

  Fly   477 YASN---------------PLEHANYVQYYTDYYTTEISKNCRDRQVTEANSGAAVALSAIQRKQ 526
            :.|.               .:|.|.:.|.|..........|..::|.|   .|.|..:..|:.: 
plant   515 HGSGTGISAPSHSNNLAAAAIEAATFSQQYDGVGWAPKEYNTGEKQNT---GGQAQGVGEIESQ- 575

  Fly   527 RKVSQMETTVSVTEAKVAFLARGESAPKGNDGKKYDTPDVSKYQYDETSGYYYDHVTGLYYDAHS 591
                                 :|.|||:            |.|.:||.||||||..:|.|||.:|
plant   576 ---------------------KGTSAPQ------------SGYVWDEASGYYYDAASGYYYDGNS 607

  Fly   592 QYYYNNETGAYLYWDQKRSTYVLATPASTQAALKEVLADAEKKEEE------------------- 637
            ..||::.:|.:..:||:...||.....:.::.:.|...|:.|||:.                   
plant   608 GLYYDSNSGLWYSYDQQTQQYVPCPDQNNESKVTENQPDSAKKEKSSQQKVIISAATTPNVEKVL 672

  Fly   638 --------------AKKAKEKEKEKE-EAGGKPDKVKVAKKIVKDMEKWAKQLNQKKDYTAVATP 687
                          |.:.:|||:.|| :...|...:...||:...:..|    .|:...|.:..|
plant   673 SLPDAVQAAAAAAIASEKREKERVKEIKLASKTSLLASKKKMSNVLTMW----KQRSHETQIQRP 733

  Fly   688 QPILSDTEAATTSRASQGAYADVGFSILEKKELGKLNDYV------------------------P 728
            .|.|.|.....::.|..        |....:.:|||...|                        .
plant   734 SPSLGDNPPTVSAEARS--------SFSTGQSMGKLKSDVIIAKERSTSNHGVSALTTAESSSSS 790

  Fly   729 EAGPPAISKLVGAYGGPSDSEDDN----------SANQKALEASVGTKRAISDESDYVDFQKLTC 783
            ..|...:..:.|::||.......:          ||:..::..|...:|..|:..          
plant   791 TTGGTLMGVMRGSFGGTLGGASSSASVQMPPILPSASPASVSVSGSGRRRFSETP---------- 845

  Fly   784 LLCMRAFQSLDILQKHLKMSNLHKENLDKLKRNPAVEAGTDEGLSYRDRAKERR----------- 837
                             .....|:|       .|..        ||||||.|||           
plant   846 -----------------TAGPTHRE-------QPQT--------SYRDRAAERRNLYGSSTSSGN 878

  Fly   838 -----------LKYGESDP---PPPNRSRERFEQEIKTLQSRQKDSFGA-TAAMPISSTNVGSRL 887
                       |:.|.|||   ||....|     .|.|  |.:..||.. |....|..:|||:|:
plant   879 DVIDSSEDLMGLRKGSSDPTPFPPGVGGR-----GITT--STEVSSFDVITEERAIDESNVGNRM 936

  Fly   888 MQKMGWSEGQGLGKKNQGRTEIIEADGRSNNVGLGNNTG------HMAPGNDYKSYIKKMMKQRY 946
            ::.|||.||.||||...|..|.::|.|.....|||:...      .:.||:.|::.:.|....|:
plant   937 LRNMGWHEGSGLGKDGSGMKEPVQAQGVDRRAGLGSQQKKVDAEFEVQPGDTYRTLLHKKALARF 1001

  Fly   947 EN 948
            .:
plant  1002 RD 1003

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4896NP_608583.5 DUF1777 91..>158 CDD:285811 25/85 (29%)
RRM1_RBM5_like 211..291 CDD:241005 26/103 (25%)
ZnF_RBZ 296..320 CDD:197784 12/23 (52%)
RanBP2-type Zn finger 298..317 CDD:275376 9/18 (50%)
RRM1_RRM2_RBM5_like 343..429 CDD:240759 17/85 (20%)
OCRE_RBM5_like 562..617 CDD:293881 22/54 (41%)
OCRE repeat 1 567..574 CDD:293881 3/6 (50%)
OCRE repeat 2 575..582 CDD:293881 6/6 (100%)
OCRE repeat 3 583..590 CDD:293881 4/6 (67%)
OCRE repeat 4 591..598 CDD:293881 3/6 (50%)
OCRE repeat 5 600..607 CDD:293881 1/6 (17%)
G-patch 882..922 CDD:279867 18/39 (46%)
SUANP_001190084.1 PHA02896 <74..>219 CDD:165222 41/151 (27%)
RRM1_RRM2_RBM5_like 270..350 CDD:240759 23/81 (28%)
ZnF_RBZ 382..405 CDD:197784 12/22 (55%)
RanBP2-type Zn finger 383..402 CDD:275376 9/18 (50%)
RRM1_RRM2_RBM5_like 431..511 CDD:240759 21/132 (16%)
OCRE_SUA_like 579..631 CDD:293885 25/63 (40%)
OCRE repeat 1 583..590 CDD:293885 3/6 (50%)
OCRE repeat 2 591..598 CDD:293885 6/6 (100%)
OCRE repeat 3 599..606 CDD:293885 4/6 (67%)
OCRE repeat 4 607..614 CDD:293885 3/6 (50%)
OCRE repeat 5 616..623 CDD:293885 1/6 (17%)
G_patch 927..971 CDD:197727 19/43 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 49 1.000 Domainoid score I4422
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 183 1.000 Inparanoid score I1429
OMA 1 1.010 - - QHG55750
OrthoDB 1 1.010 - - D786674at2759
OrthoFinder 1 1.000 - - FOG0002462
OrthoInspector 1 1.000 - - otm3230
orthoMCL 1 0.900 - - OOG6_102541
Panther 1 1.100 - - O PTHR13948
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1642
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.980

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