DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4896 and Gpatch2

DIOPT Version :9

Sequence 1:NP_608583.5 Gene:CG4896 / 33305 FlyBaseID:FBgn0031319 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_080643.4 Gene:Gpatch2 / 67769 MGIID:1915019 Length:527 Species:Mus musculus


Alignment Length:455 Identity:92/455 - (20%)
Similarity:157/455 - (34%) Gaps:155/455 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   607 QKRSTYVLATPASTQAALKEVLADAEKKEEEAKKAKEK-EKEKEEAGGKPDKVKVAKK------- 663
            :||.:|.:..|..|...|.|  ......||.:|..:|| ...|::.....|::.|||:       
Mouse    70 RKRRSYNVHHPWETGHCLSE--GSDSSLEEPSKDYREKHSNNKKDRSDSDDQMLVAKRRPSSNLS 132

  Fly   664 ---------------IVKDMEKWAKQLNQKKDYTAVATPQPILSD-----------TEAATTSRA 702
                           .|..:.....:..:|....||..||.:.|.           .:.....||
Mouse   133 SSVRGKRLLWHESDFAVDSLGNRTLRRRRKVKRMAVDLPQDVSSKRTMTQLPEGCRDQDMDNDRA 197

  Fly   703 SQGAYADVGFSILEKKELGKLNDYVPEAGPPAISKLVGAYGGPSDSEDDNSANQKALE------- 760
            ||  |.:.....::|::|..:     ..||....:     ||..:||:.:..|:..:|       
Mouse   198 SQ--YPEFTRKKVKKRKLKGI-----RPGPKTQEE-----GGVLESEERSQPNKDRMEYEEQKAS 250

  Fly   761 ----------------ASVGT----KRAISDESDYVDFQKLTCLLCMRA---------------- 789
                            |.:.|    ::...::||:. ::|.:...|..|                
Mouse   251 DELRSESDTSSLSSTDAGLFTNDEGRQGDDEQSDWF-YEKESGGACGIAGVVPWWEKDEPAELDT 314

  Fly   790 ------FQSL----DILQKH-------LKMSNLH---KENLDKLKRNP-----AVEAGTDEGLSY 829
                  |:|:    ..|..|       .::|.||   .:|:.|....|     |...|:::.:.:
Mouse   315 NLPDPVFESILSGSFPLMSHPGRGGFQARLSRLHGTPSKNIKKSSGAPPSMLSAPGPGSNKRMVH 379

  Fly   830 RDRAKER---------RLKYGESDPPPPNRSRERFEQ--EIKTLQSRQKDSF------------- 870
            ......|         |.::|:......||:....::  .:|| .|||....             
Mouse   380 FSPDAHRHDHWFSPGARTEHGQHQLLRDNRAERGHKKSCSLKT-ASRQTSMHLGSLCTGDIKRRR 443

  Fly   871 ------GATA-------AMPISSTNVGSRLMQKMGWSEGQGLGKKNQGRTEIIEADGRSNNVGLG 922
                  |.||       |.||..:|:|:|::|.|||:.|.|||:..:|..|.::|..|...:|||
Mouse   444 KAAPLPGPTAAGIVGENAQPILESNIGNRMLQSMGWTPGSGLGRDGRGIAEPVQAVQRPKGLGLG 508

  Fly   923  922
            Mouse   509  508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4896NP_608583.5 DUF1777 91..>158 CDD:285811
RRM1_RBM5_like 211..291 CDD:241005
ZnF_RBZ 296..320 CDD:197784
RanBP2-type Zn finger 298..317 CDD:275376
RRM1_RRM2_RBM5_like 343..429 CDD:240759
OCRE_RBM5_like 562..617 CDD:293881 3/9 (33%)
OCRE repeat 1 567..574 CDD:293881
OCRE repeat 2 575..582 CDD:293881
OCRE repeat 3 583..590 CDD:293881
OCRE repeat 4 591..598 CDD:293881
OCRE repeat 5 600..607 CDD:293881 92/455 (20%)
G-patch 882..922 CDD:279867 16/39 (41%)
Gpatch2NP_080643.4 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..135 17/66 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 175..281 18/117 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 350..375 5/24 (21%)
G-patch 467..510 CDD:279867 18/42 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 480..527 11/29 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I11280
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.