DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4896 and rbm5

DIOPT Version :10

Sequence 1:NP_608583.5 Gene:CG4896 / 33305 FlyBaseID:FBgn0031319 Length:949 Species:Drosophila melanogaster
Sequence 2:XP_012820244.1 Gene:rbm5 / 550032 XenbaseID:XB-GENE-494987 Length:838 Species:Xenopus tropicalis


Alignment Length:908 Identity:295/908 - (32%)
Similarity:446/908 - (49%) Gaps:154/908 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 GQDMDKDRDHRWKNYDRVSRERNHDDFDRGSERSSRSNDQRQFNNNGNSNSSSSYRD-----REK 177
            |.|....|..|...|.......:.||.|..|.|  |.::.:::.:..:|.....|||     |::
 Frog     2 GSDKRVSRSERSGRYGSAFDRDDRDDRDTRSRR--RDSEYKRYRDERSSERYDDYRDYDSPERDR 64

  Fly   178 ERDRDRRCSSDEDSD--------MASEFRQRGAYNSGSSVEPLNNIILFGLKKHVTEADIMGELI 234
            .|||:|| :||...|        |..::||....:...|    ..|:|.||..::.|.||. ||:
 Frog    65 MRDRERR-NSDRSEDGYHSDGDYMDHDYRQDYYMDEKES----KTIMLRGLPININENDIR-ELV 123

  Fly   235 K--VDLEPTSIRVMRKQQTGASRCFAFVEFKTVEEATRWMELTQGVLQLGDHRVTMQYSHTR--I 295
            :  ...:|..:|:| |::||.||.||||||..:::||||||..|..|.:....:.|.||:.|  .
 Frog   124 ESFEGPQPADVRLM-KRKTGLSRGFAFVEFYHLQDATRWMEANQKKLVIQGKTIAMHYSNPRPKF 187

  Fly   296 SDWTCIKCGASNFKRRFQCYMCNASRAESE-NALYGAGEGVDEI-----SQILTKKIMLRGLDAL 354
            .||.|.|||..||:||.:|:.|.|::|||: .|..|:.:.....     |..::..|:||.:...
 Frog   188 EDWLCNKCGLYNFRRRLKCFRCGAAKAESDLEAPSGSSDAPQSTDYYSDSGYVSSAIILRNIGPH 252

  Fly   355 TNEEGVLTALQQRLPELAKTVSKVLVSRDALTNASRGICYLNFDTLIDSMNVFNGLTALDPPLTL 419
            |..:.:|:||   .|.::..||.:.:.:|..|..:||..::...:.:::..:...|..|.|||.:
 Frog   253 TVVDSILSAL---APYVSLVVSNIRLIKDKQTQQNRGFAFVQLPSTLEASQLLQILQTLHPPLKI 314

  Fly   420 DDKTVIVTYCIDSENRQMMPAEGNFFRAGETAMSPSAITAAYTLADVPRLAEYSASVYASNPLE- 483
            |.|||.|.:...:....::| :|:  |....:::.:||.|          |::|::..|....| 
 Frog   315 DGKTVGVDFAKSARKDLVLP-DGH--RVSAFSVASTAIAA----------AQWSSTQQAQQSGEG 366

  Fly   484 ------------HANYVQYYTDYYTTEISKNCRDRQVT--EANSGA-------AVALSAIQRKQR 527
                        :|||.|...||.....::.....|.|  :|...|       ||...:.|..|:
 Frog   367 GEYAYLQPGQEGYANYGQCSQDYQPFYQAQTGAAEQSTAPQAEGSAPVPATTSAVVCQSPQMYQQ 431

  Fly   528 KVSQME------------TTVSVTEAKVAFLARGESAPKGN--DGKKYDTPDVSKYQYDETSGYY 578
            ..|..:            :|.|.||         |:||...  .|.||..||.|.|||||:||||
 Frog   432 PGSPTQSGTSTAANTTPASTTSTTE---------EAAPPNAVIPGVKYSVPDTSTYQYDESSGYY 487

  Fly   579 YDHVTGLYYDAHSQYYYNNETGAYLYWDQKRSTYVLATPASTQAALKEVLADAEKKEEEAKKAKE 643
            ||..||||||.:||||||:.|..|||||.::.||:.|...:.|:.       |:.....|..:||
 Frog   488 YDPQTGLYYDPNSQYYYNSLTQQYLYWDGEKQTYLPAADGAGQSG-------AQPNGANAGSSKE 545

  Fly   644 KEKEKEEAGGKPDKVKVAKKIVKDMEKWAKQLNQKKDYTAVATPQPILSDTEAATTSRASQGAYA 708
            .:::||    || |.|.|::|.||||:|||.||::|: ....:.||:     :|......:.|.|
 Frog   546 GKEKKE----KP-KSKTAQQIAKDMERWAKSLNKQKE-NFKNSFQPL-----SARDEERKESAAA 599

  Fly   709 DVGFSILEKKELGKL--NDYVP---------EAGPPAISKLVGAYGGPSDSEDDNSANQKALEAS 762
            |.||::.|||: |.|  ..::|         |...|....||.||.|.||:|:::       |..
 Frog   600 DAGFALFEKKQ-GALLERQFMPDMMMMVNTEEEEKPPNKALVAAYSGDSDNEEES-------ERL 656

  Fly   763 VGTKRAISDESDYVDFQKLTCLLCMRAFQSLDILQKHLKMSNLHKENLDKLKRN-------PAVE 820
            :|.    .||...:|::||.||||.|.|.:.|.|.:|.::|:|||:||:..:|:       .|:|
 Frog   657 LGA----VDEEKLLDWKKLACLLCRRQFPNKDALTRHQQLSDLHKQNLEVYRRSKMSEQELEALE 717

  Fly   821 AGTDEGLSYRDRAKERRLKYGESDPPPPNRSRERFEQEIKTLQSRQKDSFGATAAMPISSTNVGS 885
            ....|. .|||||.|||.|||..:||.|  .|:||:..:...:...||.        |.::|:|:
 Frog   718 LKEREA-KYRDRAAERREKYGIPEPPEP--KRKRFDPTVVNYEQPTKDG--------IDNSNIGN 771

  Fly   886 RLMQKMGWSEGQGLGKKNQGRTEIIEADGRSNNVGLG--NNTGHMAPGNDYKSYIKKMMKQRY 946
            :::|.|||.||.|||:|:||.|..|:|..|....|||  .::..:...:.||..::|.|..|:
 Frog   772 KMLQAMGWKEGSGLGRKSQGITAPIQAQVRMRGAGLGAKGSSYGVNTSDSYKDAVRKAMFARF 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4896NP_608583.5 U2AF_lg 74..>158 CDD:273727 11/39 (28%)
RRM1_RBM5_like 211..291 CDD:409977 32/81 (40%)
ZnF_RBZ 296..320 CDD:197784 12/23 (52%)
RanBP2-type Zn finger 298..317 CDD:275376 10/18 (56%)
RRM1_RRM2_RBM5_like 343..429 CDD:409752 24/85 (28%)
OCRE_RBM5_like 562..617 CDD:293881 35/54 (65%)
OCRE repeat 1 567..574 CDD:293881 5/6 (83%)
OCRE repeat 2 575..582 CDD:293881 6/6 (100%)
OCRE repeat 3 583..590 CDD:293881 6/6 (100%)
OCRE repeat 4 591..598 CDD:293881 6/6 (100%)
OCRE repeat 5 600..607 CDD:293881 4/6 (67%)
G-patch 882..924 CDD:396249 21/43 (49%)
rbm5XP_012820244.1 RRM1_RBM5 98..184 CDD:410146 35/91 (38%)
zf-RanBP 186..213 CDD:395516 13/26 (50%)
RanBP2-type Zn finger 190..209 CDD:275376 10/18 (56%)
RRM2_RBM5 240..325 CDD:410149 24/87 (28%)
PRK10263 <333..>513 CDD:236669 63/201 (31%)
OCRE_RBM5 471..526 CDD:293887 35/54 (65%)
OCRE repeat 1 476..483 CDD:293887 5/6 (83%)
OCRE repeat 2 484..491 CDD:293887 6/6 (100%)
OCRE repeat 3 492..499 CDD:293887 6/6 (100%)
OCRE repeat 4 500..507 CDD:293887 6/6 (100%)
OCRE repeat 5 509..516 CDD:293887 4/6 (67%)
G-patch 767..810 CDD:396249 21/42 (50%)

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