DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4896 and rbm5

DIOPT Version :9

Sequence 1:NP_608583.5 Gene:CG4896 / 33305 FlyBaseID:FBgn0031319 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_001093608.3 Gene:rbm5 / 324302 ZFINID:ZDB-GENE-030131-3022 Length:835 Species:Danio rerio


Alignment Length:912 Identity:281/912 - (30%)
Similarity:433/912 - (47%) Gaps:133/912 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 EDQGNYNSRQNLDQRHGEDKYDRRHADSQGRRDHDSNYDKSGQDMDKDRDHRWKNYDRVSRERNH 141
            |..|.|.|.|:.|    :|:.|||..|.:|...|..:.|:.....|.||..|....||..|.   
Zfish    11 ERSGRYGSEQSRD----DDRRDRRDRDDRGYDSHRWSDDRRSDRYDGDRGDRGDRGDRGDRG--- 68

  Fly   142 DDFDRGSERSSRSNDQRQFNNNGNSNSSSSYRDREKERDRDRRCSSDEDSDMASEFRQRGAYNSG 206
               ||...|.|....:::.|::|:.:...|..|..:.         |...|.|.|...:      
Zfish    69 ---DRYWSRDSPERGRKRRNSDGSEDGHHSDGDYSEH---------DYRGDPADEKESK------ 115

  Fly   207 SSVEPLNNIILFGLKKHVTEADIMGELIKVDL----EPTSIRVMRKQQTGASRCFAFVEFKTVEE 267
                   .|:|.||..:.:||||..   .:||    :|..:|:|:| :||.||.||||||..::.
Zfish   116 -------TIMLRGLPMNTSEADIRA---AIDLLEGPKPMDVRLMKK-RTGISRGFAFVEFYHLQA 169

  Fly   268 ATRWMELTQGVLQLGDHRVTMQYSHTR--ISDWTCIKCGASNFKRRFQCYMCNASRAESENALYG 330
            ||||||..|.:|.:....|.:.||:.|  ..||.|..||..||:||.:|:.|.|::|:||::...
Zfish   170 ATRWMETNQKLLCVQGKPVVVHYSNNRHKFEDWLCNSCGLYNFRRRLKCFRCGAAKADSESSSTT 234

  Fly   331 AGEGVDEISQILTKKIMLRGLDALTNEEGVLTAL---QQRLPELAKTVSKVLVSRDALTNASRGI 392
            ...............|:||.:..|:..|.:|.||   ...||      ..:.:.:|..|..:||.
Zfish   235 GTTETQPSGDYYGDTIILRNIAPLSTVEAILGALAPFANLLP------GNIRLIKDKQTGQNRGF 293

  Fly   393 CYLNFDTLIDSMNVFNGLTALDPPLTLDDKTVIVTYCIDSENRQMMPAEGNFFRAGETAMSPSAI 457
            .::...:.:::..:...|..|.|||.||.||:.|.|...:....::| :||  |....:::.:||
Zfish   294 AFVQLASPLEASQLLTILQGLQPPLKLDGKTIGVDYAKSARKDLLLP-DGN--RVSAFSVASTAI 355

  Fly   458 TAAYTLADVPRLAEYSASVYASNPLEHANYVQYYTDYYTTE-----------ISKNCRDRQVTEA 511
            .||...:..|:......|.|:.....:....|.|..||..:           |.......:|..|
Zfish   356 AAAQWSSSQPQQIVEPTSEYSYLQEGYVPCSQEYQAYYQQQAGAVDPSLANGILGAAPGVKVVPA 420

  Fly   512 NSGAAVALSAIQRKQRKVSQME-------TTVSVTEAKVAFLARGESAPKGNDGKKYDTPDVSKY 569
            .:|..::.||...:..:.:|:|       .|.:::....:.::...:|...:...:.:.||.|.|
Zfish   421 ATGVVISQSAQVYQSPQAAQIEGKAQCITATATISAPATSAVSATATATSTSQENQANVPDTSSY 485

  Fly   570 QYDETSGYYYDHVTGLYYDAHSQYYYNNETGAYLYWDQKRSTYVLATPASTQAALKEVLADAEKK 634
            ||||:||||||.:||||||.::|||||::|..|||||.::..|:.|..::.|.|    :|.....
Zfish   486 QYDESSGYYYDPITGLYYDPNTQYYYNSQTQQYLYWDGEKQAYLPAVDSNAQNA----MASTSTP 546

  Fly   635 EEEAKKAKEKEKEKEEAGGKPDKVKVAKKIVKDMEKWAKQLNQKKDYTAVATPQPILSDTEAATT 699
            ::|.|:.|||.|.           |.|::|.||||:|||.||::|: ...::.|||       :.
Zfish   547 QKEGKEKKEKPKS-----------KTAQQIAKDMERWAKSLNKQKE-NFKSSFQPI-------SQ 592

  Fly   700 SRASQGAYADVGFSILEKKELGKLNDYVPEAGPPAISK-------LVGAYGGPSDSEDDNSANQK 757
            ....:.|.||.||::.|||. |.|...|.||...|..:       ||.||.|.|:.|        
Zfish   593 EERREAAAADAGFTLFEKKP-GALERLVTEASKMAEEESCSSKVGLVAAYSGDSEPE-------- 648

  Fly   758 ALEASVGTKRAISDESDYVDFQKLTCLLCMRAFQSLDILQKHLKMSNLHKENLDKLKRNPAVEAG 822
              |...|..|    |....|::||.||||.|.|.|.:.|.:|.::|:||::||:.::|:...||.
Zfish   649 --ELIDGDDR----EDKLTDWKKLACLLCRRQFPSKEALIRHQQLSDLHRQNLEVMRRSKLSEAE 707

  Fly   823 TDE------GLSYRDRAKERRLKYGESDPPPPNRSRERFEQEIKTLQSRQKDSFGATAAMPISST 881
            .:|      .:.|||||.|||.|||..:||.|.:.:......:...:...||.        ::|.
Zfish   708 LEELERKETEMKYRDRAAERREKYGIPEPPVPKKRKYTAPTPVVNYEQPTKDG--------LNSD 764

  Fly   882 NVGSRLMQKMGWSEGQGLGKKNQGRTEIIEADGRSNNVGLG--NNTGHMAPGNDYKSYIKKMMKQ 944
            |:|::::|.|||.||:|||:..||.|..|||..|:...|||  .::.::...:.||..::|.|..
Zfish   765 NIGNKMLQAMGWKEGKGLGRNQQGITTPIEAQLRAKGAGLGTKGSSYNLTASDTYKDAVRKAMFA 829

  Fly   945 RY 946
            |:
Zfish   830 RF 831

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4896NP_608583.5 DUF1777 91..>158 CDD:285811 19/66 (29%)
RRM1_RBM5_like 211..291 CDD:241005 33/83 (40%)
ZnF_RBZ 296..320 CDD:197784 11/23 (48%)
RanBP2-type Zn finger 298..317 CDD:275376 9/18 (50%)
RRM1_RRM2_RBM5_like 343..429 CDD:240759 24/88 (27%)
OCRE_RBM5_like 562..617 CDD:293881 33/54 (61%)
OCRE repeat 1 567..574 CDD:293881 5/6 (83%)
OCRE repeat 2 575..582 CDD:293881 6/6 (100%)
OCRE repeat 3 583..590 CDD:293881 6/6 (100%)
OCRE repeat 4 591..598 CDD:293881 5/6 (83%)
OCRE repeat 5 600..607 CDD:293881 4/6 (67%)
G-patch 882..922 CDD:279867 19/39 (49%)
rbm5NP_001093608.3 RRM_SF 110..196 CDD:302621 36/102 (35%)
zf-RanBP 198..225 CDD:279035 12/26 (46%)
RanBP2-type Zn finger 202..221 CDD:275375 9/18 (50%)
RRM2_RBM5 246..331 CDD:241199 25/90 (28%)
OCRE_RBM5 478..533 CDD:293887 33/54 (61%)
OCRE repeat 1 483..490 CDD:293887 5/6 (83%)
OCRE repeat 2 491..498 CDD:293887 6/6 (100%)
OCRE repeat 3 499..506 CDD:293887 6/6 (100%)
OCRE repeat 4 507..514 CDD:293887 5/6 (83%)
OCRE repeat 5 516..523 CDD:293887 4/6 (67%)
G-patch 763..807 CDD:279867 22/43 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587907
Domainoid 1 1.000 116 1.000 Domainoid score I5905
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 335 1.000 Inparanoid score I2382
OMA 1 1.010 - - QHG55750
OrthoDB 1 1.010 - - D786674at2759
OrthoFinder 1 1.000 - - FOG0002462
OrthoInspector 1 1.000 - - mtm6537
orthoMCL 1 0.900 - - OOG6_102541
Panther 1 1.100 - - O PTHR13948
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1642
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.910

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