DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4896 and Rbm6

DIOPT Version :10

Sequence 1:NP_608583.5 Gene:CG4896 / 33305 FlyBaseID:FBgn0031319 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_035381.2 Gene:Rbm6 / 19654 MGIID:1338037 Length:1118 Species:Mus musculus


Alignment Length:1162 Identity:240/1162 - (20%)
Similarity:404/1162 - (34%) Gaps:404/1162 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FSGGNG-----NGSESGYRRYSRSRS------RSRE------------------RSRDRNEYRRR 44
            :.||:|     .|.|:.:..| |.|.      |||:                  |....:::|.|
Mouse   135 YRGGDGTPMDYRGRETPHMNY-RDRDSHTVDFRSRDVPPTDFRGRGTYDLDFRGREGSHSDFRGR 198

  Fly    45 NSRS---RSRERS-SHYRNDRSPDRDLYRDLINEDYEDQGNYNSRQNLDQRHGEDKYDRRHADSQ 105
            :...   |||::| |.:||....|.| :||......:.:|..::..:||.|:    .|..|:|.:
Mouse   199 DLSDLDFRSRDQSRSDFRNRDVSDLD-FRDKDGTQVDFRGRGSATTDLDFRN----RDTPHSDFR 258

  Fly   106 GRRDHDSNYDKSGQDMD-----KDR-----DHRWKNYDRVS-RERNHDDF----------DRGSE 149
            ||....:..|..|:::.     |||     |.:..:|.:.| :||.|...          |...|
Mouse   259 GRHRTRTYQDFRGREVGPCMEFKDREMPPMDPKVLDYIQPSPQEREHSGMNMNKREESIHDHAME 323

  Fly   150 RSSRSNDQRQFNNN----GNS-------NSSSSYRDRE---KERDRDRRCSSDEDSDMASEFRQR 200
            |.:....:.:|.::    |.:       .|.|.:::.:   :|:|:.:....::.|..|..|::.
Mouse   324 RPAFGVQKGEFEHSETREGETQSGTFEHESQSDFQNSQSPVQEQDKPKLSGGEQQSSDAGLFKEE 388

  Fly   201 G------------------------------------------------------AYNSGSSVEP 211
            |                                                      .|.:|.|.|.
Mouse   389 GDLDFLGQQDTDYRSIEYCDVDHRLPGNQIFGYGQSKSFSQGKMSRDAQQDLQDQDYRTGPSEEK 453

  Fly   212 LNNII-LFGLKKHVTEADIMGELIKVDLEPTSIRVMRKQQTGASRCFAFVEFKTVEEATRWMELT 275
            .|.:| |.|:.::.|:.:|:......|..|.....:::..||....:..|||..:|:|...||..
Mouse   454 PNRLIRLSGVPENATKEEILNAFRTSDGIPVKDLQLKEYNTGYDYGYVCVEFSLLEDAIGCMEAN 518

  Fly   276 QGVLQLGDHRVTMQYSHTRISDWTCIKCGASNFKRRFQCYMCNASRAESENAL------------ 328
            ||.|.:.|..||::|..:. ..|.|.:|.||....:..|..|...:.|.:..|            
Mouse   519 QGTLMIHDKEVTLEYVPSP-DFWYCKRCKASTGGHQSSCSFCKGPKEEVKQELVSYPQPQKTSIP 582

  Fly   329 ------------------------------------------YGAGEGV-------------DEI 338
                                                      :...||:             |..
Mouse   583 VPSEKQPNQPRPADKEHELRKREEGQESRLGHQKRDTERYFPHSRREGLTFRRDREKEPWSGDSR 647

  Fly   339 SQILTKKIMLRGLDALTNEEGVLTALQQRLPELAKTVSKVLVSRDALTNASRGICYLNFDTLIDS 403
            ....:|.|||:.:...|..|.::..|:   |.:..|.:.|.:.::..........:::.|:..::
Mouse   648 QDGESKTIMLKRIYRSTPPEVIVEVLE---PYVHLTTANVRIIKNRTGPMGHTYGFIDLDSHAEA 709

  Fly   404 MNVFNGLTALDPPLTLDDKTVIVTYCIDSENRQMMPAEGNFFRAGETAMSPSAITAAYTLADVPR 468
            :.|...|..||||.::|.|.|.|..           |.|.  |..::.                 
Mouse   710 LRVVKILQNLDPPFSIDGKMVAVNL-----------ATGK--RRNDSG----------------- 744

  Fly   469 LAEYSASVYASNPLEHANYVQYYTDYYTTEISKNCRDRQVTEANSGAAVALSAIQRKQRKVSQME 533
                          :|::::.||      :..|..|||:....||.    .|:...:|.:.|..:
Mouse   745 --------------DHSDHMHYY------QGKKYFRDRRGGNRNSD----WSSDTNRQGQQSSSD 785

  Fly   534 TTVSVTEAKVAFLARGESAPKGNDGKKYDTPDVSKYQYDETSGYYYDHVTGLYYDAHSQYYYNNE 598
            .                                  |.||.|:|||||.:.|.|||.::|      
Mouse   786 C----------------------------------YIYDSTTGYYYDPLAGTYYDPNTQ------ 810

  Fly   599 TGAYLYWDQKRSTYVLATPAS-TQAALKEVLADAEKKEEEAKKAKEKE-KEKEEAG--------- 652
                      :..||...|.| .:..:||..:.::.|....|:..::: |||::.|         
Mouse   811 ----------QEVYVPQDPESPDEEEIKEKKSTSQGKSNSKKETSKRDGKEKKDRGMTKFQESTS 865

  Fly   653 -GKPDKVKVAKKIVKDMEKWAKQLNQKKDYTAVATPQPILSDTEAATTSRASQGAYADVGFSILE 716
             |||....|.||.:....|       |::     :|.|                           
Mouse   866 EGKPPLEDVFKKPLPPTVK-------KEE-----SPPP--------------------------- 891

  Fly   717 KKELGKLNDYVPEAGPPAISKLVGAYGGPSDSEDDNSANQ-------KALEASVGTKRAISDESD 774
                       |:...|.|. |:|.|||.||.|::....|       .|......||:...|:. 
Mouse   892 -----------PKVVNPLIG-LLGEYGGDSDYEEEEEEEQAPPVQPRTAQPREEMTKKENEDDK- 943

  Fly   775 YVDFQKLTCLLCMRAFQSLDILQKHLKMSNLHKENLD---KLKRNPA----VEAGTDEGLSYRDR 832
            ..|:.||.||||.|.|.:.::|.||.::|:|||:||:   |:|::..    :|....|| .::::
Mouse   944 LTDWNKLACLLCRRQFPNKEVLTKHQQLSDLHKQNLEIHRKIKQSEQELAYLERREREG-RFKEK 1007

  Fly   833 AKERRLKYGESDPPPPNRSRERFEQEIKTLQSRQKDSFGATAAMPI-----SSTNVGSRLMQKMG 892
            ..:||.|....|  .|.|.|.::        ||:.||    ...|:     .:::.|....|..|
Mouse  1008 GNDRREKLQSFD--SPERKRIKY--------SRETDS----DRNPVDKEDTDTSSKGGCAQQATG 1058

  Fly   893 WSEGQGLGKKNQGRTEIIEADGRSNNVGLG--NNTGHMAPGNDYKSYIKKMMKQRYE 947
            |.:|.|||..:.|.....|.:||....|.|  ..|........|:..::::|..||:
Mouse  1059 WRKGAGLGYSHPGLGSSEEIEGRMRGPGGGPPGRTSKRQSNETYRDAVRRVMFARYK 1115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4896NP_608583.5 U2AF_lg 74..>158 CDD:273727 23/104 (22%)
RRM1_RBM5_like 211..291 CDD:409977 23/80 (29%)
ZnF_RBZ 296..320 CDD:197784 7/23 (30%)
RanBP2-type Zn finger 298..317 CDD:275376 6/18 (33%)
RRM1_RRM2_RBM5_like 343..429 CDD:409752 21/85 (25%)
OCRE_RBM5_like 562..617 CDD:293881 16/54 (30%)
OCRE repeat 1 567..574 CDD:293881 3/6 (50%)
OCRE repeat 2 575..582 CDD:293881 5/6 (83%)
OCRE repeat 3 583..590 CDD:293881 4/6 (67%)
OCRE repeat 4 591..598 CDD:293881 1/6 (17%)
OCRE repeat 5 600..607 CDD:293881 0/6 (0%)
G-patch 882..924 CDD:396249 14/43 (33%)
Rbm6NP_035381.2 YjbI 94..259 CDD:440968 32/129 (25%)
RRM1_RBM6 456..533 CDD:409753 22/76 (29%)
RRM2_RBM6 651..737 CDD:409979 22/99 (22%)
OCRE_RBM6 763..828 CDD:293882 23/118 (19%)
OCRE repeat 1 769..776 CDD:293882 2/10 (20%)
OCRE repeat 2 785..792 CDD:293882 3/40 (8%)
OCRE repeat 3 793..800 CDD:293882 5/6 (83%)
OCRE repeat 4 801..808 CDD:293882 4/6 (67%)
OCRE repeat 5 811..818 CDD:293882 2/6 (33%)
G-patch 1046..>1079 CDD:396249 10/32 (31%)

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