DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4896 and Y55D9A.2

DIOPT Version :10

Sequence 1:NP_608583.5 Gene:CG4896 / 33305 FlyBaseID:FBgn0031319 Length:949 Species:Drosophila melanogaster
Sequence 2:NP_502415.1 Gene:Y55D9A.2 / 178216 WormBaseID:WBGene00013224 Length:511 Species:Caenorhabditis elegans


Alignment Length:485 Identity:108/485 - (22%)
Similarity:174/485 - (35%) Gaps:135/485 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   578 YYDHVTGLYYDAHSQYYY----------NNETGAYLYWDQKRSTYVLATPASTQAALKEVLADAE 632
            |:.|..|::|:..::.:|          |.|...|:..::::.|| .|:.:..:.|: ::|..||
 Worm    33 YWSHEHGMFYNPDTEQFYRPEDKTVYQLNAEGSEYVLVERRKPTY-WASRSYRKRAI-DLLGSAE 95

  Fly   633 KKE----------------EEAKKAKEKEKEKEEAGGKPDKVKVA---KKIVKDMEKWAKQLNQK 678
            .|:                ::..|.:|.|||||......:. |||   .:|.|..:...::.|..
 Worm    96 FKKFDQNEVNICEIAFGMVDKVIKGEEMEKEKEYLRSIANN-KVALMQHRINKVFKGNRRRKNPH 159

  Fly   679 KDYTAVATPQPILSDTEAATTSRAS-----QGAY---ADVGFSILEKKELGKLNDYVPEAGPPA- 734
            :.|.|....    |......|.:..     :.||   :|..||  ||.|...|........||. 
 Worm   160 RQYVANVDE----SSGHVEYTLQVDDYFDWEDAYEDNSDDEFS--EKDEQAVLMHQEGFDQPPCM 218

  Fly   735 ----------ISKLVGAYGGPSDSEDDNSANQKALEASVGTKRAISDESDYVDFQKL-------- 781
                      |..:.|.|.| ||.:.:...:.:.|.... .:...|:|:.....:||        
 Worm   219 RVMDALRRLHIITISGGYLG-SDRDCEIVVSNQLLPERC-AEIVYSEEAQCYSIEKLEDACILQV 281

  Fly   782 -----------------------------------TCLLCMRAFQSLD--------ILQKHLKMS 803
                                               ||..|....|..|        :..|:::..
 Worm   282 NGNNVKTSSPVDLCQGDSILLSGERFDVHVHNGSNTCPGCEPGLQQGDDDIAPVTTVPAKNIRGE 346

  Fly   804 NLHKENL----------------DKLKRNPAVEAGTDEGLSYRDRAK-ERRLKYGESDPPPPNRS 851
            ...::||                :.:::.||  .|..|...:|..|. .....||.....|....
 Worm   347 VARRKNLKQMMKSYGIRPDDVLSEPIRKRPA--TGPSEMNIHRSEAPGSSSDMYGSCAAKPMPEG 409

  Fly   852 RERFEQEIKTLQSRQKDSFGATAAMPISSTNVGSRLMQKMGWSEGQGLGKKNQGRTEIIEADGRS 916
            :.:|:     |.|.......|.|..|:.|.|||.:|::.|||||||||||:.||..|.:..:.::
 Worm   410 QRKFD-----LPSTSAAVAAAAAPKPLDSGNVGFKLLKSMGWSEGQGLGKEKQGHVEPVATEVKN 469

  Fly   917 NNVGLGNNTGHMAPGNDYKSYIKKMMKQRY 946
            |..|||.|... .|...||..:.:..|||:
 Worm   470 NRKGLGANEKE-PPTKSYKDQVLEKTKQRF 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4896NP_608583.5 U2AF_lg 74..>158 CDD:273727
RRM1_RBM5_like 211..291 CDD:409977
ZnF_RBZ 296..320 CDD:197784
RanBP2-type Zn finger 298..317 CDD:275376
RRM1_RRM2_RBM5_like 343..429 CDD:409752
OCRE_RBM5_like 562..617 CDD:293881 11/48 (23%)
OCRE repeat 1 567..574 CDD:293881
OCRE repeat 2 575..582 CDD:293881 1/3 (33%)
OCRE repeat 3 583..590 CDD:293881 2/6 (33%)
OCRE repeat 4 591..598 CDD:293881 2/16 (13%)
OCRE repeat 5 600..607 CDD:293881 1/6 (17%)
G-patch 882..924 CDD:396249 22/41 (54%)
Y55D9A.2NP_502415.1 OCRE 17..70 CDD:293880 8/36 (22%)
OCRE repeat 1 22..29 CDD:293880
OCRE repeat 2 30..37 CDD:293880 1/3 (33%)
OCRE repeat 3 38..45 CDD:293880 2/6 (33%)
OCRE repeat 4 46..52 CDD:293880 1/5 (20%)
OCRE repeat 5 54..61 CDD:293880 0/6 (0%)
FHA 215..324 CDD:469597 16/110 (15%)
G-patch 433..477 CDD:396249 23/43 (53%)
Blue background indicates that the domain is not in the aligned region.

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