DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4887 and RBM10

DIOPT Version :9

Sequence 1:NP_001259859.1 Gene:CG4887 / 33304 FlyBaseID:FBgn0031318 Length:1004 Species:Drosophila melanogaster
Sequence 2:XP_024308225.1 Gene:RBM10 / 8241 HGNCID:9896 Length:1029 Species:Homo sapiens


Alignment Length:1148 Identity:328/1148 - (28%)
Similarity:480/1148 - (41%) Gaps:322/1148 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SSSRRSFSGGS-ENEGGRGSDYYRSRPGSRYSRSRSRSRERNRSHGGIRHRNSRSRSRDRDRSPV 66
            ||.||.:.... |..||||     .|.| ||.     :.:|::..||      .:||||.     
Human    57 SSPRRPYQDMEYERRGGRG-----DRTG-RYG-----ATDRSQDDGG------ENRSRDH----- 99

  Fly    67 FRNDQHRGGRGGAGNGDPDLYHSLINDDYRDQDERNYNSRSNFENRQFRRHDSFDRRHRDRDGES 131
                                       ||||.|.|:|                 .|.:..::|: 
Human   100 ---------------------------DYRDMDYRSY-----------------PREYGSQEGK- 119

  Fly   132 DRELNDYEYEQRSRDLDSRDRSSTDRDWYHNRSRSREHSRPWNRNNNHDDRSRSNERNTRHRDHR 196
                :||:        ||.:..|.:                    ::::....|..:..|.|.||
Human   120 ----HDYD--------DSSEEQSAE--------------------DSYEASPGSETQRRRRRRHR 152

  Fly   197 MYNGGGSNHNRD---RDRDRDREQDRERDRDRDRDRERRGSSDYDSDEGHMRRNKYRSTTEALNI 258
            ....|.....||   ||:|...||..|.:.:.|.:.|.:.|                      ||
Human   153 HSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEEKAS----------------------NI 195

  Fly   259 IIIFGLTKEMTRADIMSELIKVNMEPACIRIIRKQGTDSSRGIAFVEFNTVEEAKQWMDITQGVL 323
            :::..|.:..|..||..:|....::...:|::|.:.:..|||.|||||:.:::|.:||:..|..|
Human   196 VMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSL 260

  Fly   324 KLNDERVSMRYSH---KRIQDWNCNKCGVCNFKFRFYCFVCKTSREDSETTFSSG---------- 375
            .:..::|||.||.   |..:||.||||||.|||.|..||.|...:.::|.....|          
Human   261 NILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQTLPL 325

  Fly   376 ---------------------------SEGVDEVSTILTKKIMLRNLDALTNEEAVLTALQLHLK 413
                                       |:|.:..|......|:||||:..:..:::|.||..:..
Human   326 GGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAV 390

  Fly   414 DLSKTVSKVLISRDSLTQASRGICYLHFDTLVDSMNVHNALTALDPPLTLDDRVVAITYCIDLEE 478
             ||.  |.|.:.:|..||.:||..::...|:|::..:...|.||.||||:|.:.:.:.:....:.
Human   391 -LSS--SNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 452

  Fly   479 QQALPKNPKELAVKDSTVNSGNIS----AVSPSGLGGNYTLA---DVPRLAEYS----------- 525
            ..|..:..:   :..::|.|..|:    |:|.:..||..|.|   :.|  .:||           
Human   453 DMASNEGSR---ISAASVASTAIAAAQWAISQASQGGEGTWATSEEPP--VDYSYYQQDEGYGNS 512

  Fly   526 ----ASLYAS---------------------------NPAEHAYYVQYYTE--------YYTADI 551
                :||||.                           .|...:..:|.::.        .|....
Human   513 QGTESSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQSA 577

  Fly   552 NKNNRDSHLTEANSGAAVALSAIQRKQKKMSSI----------------ETTITAAATAAAQAAA 600
            ..::  |..|.|||..:.....:.|..::.:.:                ..||.:.|...::..:
Human   578 EASS--SQGTAANSQVSEPCGYVSRGGRQAAGVAWADTEPCSPVWPHDQSYTIMSPAVLKSELQS 640

  Fly   601 QVKATLAAQVASAPKGNDG-KIYPTPDVTQYQYDETSGYYYDSTTGLYYNAHSQYYYNNETGAYL 664
            ....:.|...|::|...:. ..||.|||:.||||||||||||..|||||:.:||||||.::..||
Human   641 PTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYL 705

  Fly   665 YWDQRRSTYVLATPASTQAALQEVLADAEQKGEEESKKAKEKEGGNKHDKVKVAKKIVKDMEKWA 729
            |||..|.|||   ||..|:      ||..::....||:.|||:  .|| |.|.|::|.||||:||
Human   706 YWDGERRTYV---PALEQS------ADGHKETGAPSKEGKEKK--EKH-KTKTAQQIAKDMERWA 758

  Fly   730 KQLNQKKD-----YTAVATPQPILANEVATTSRGNQGGYADVGFSILEKK----ER-------GK 778
            :.||::|:     :..:::.:.....|.||         ||.|::|||||    ||       .|
Human   759 RSLNKQKENFKNSFQPISSLRDDERRESAT---------ADAGYAILEKKGALAERQHTSMDLPK 814

  Fly   779 L-NDYAPNPTVGPMNKLVNAYGGTSDSEEDNAASSQNTQSSAVVSGGGGAEESDYVDFHKLTCLL 842
            | :|..|:|..|    ||.||.|.|||||:.             ..||...|....|:.||.|||
Human   815 LASDDRPSPPRG----LVAAYSGESDSEEEQ-------------ERGGPEREEKLTDWQKLACLL 862

  Fly   843 CKRAFQSLEILQKHLKMSTLHKENL-----AKLNQNTSSSIE----EALAYRDRAKERRLKYGES 898
            |:|.|.|.|.|.:|.::|.|||:||     |.|::|...::|    |.:.|||||.|||.|||..
Human   863 CRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIP 927

  Fly   899 DPPPPNRSRERFEQEIKTLQSRQKQSTSATPAMPISSSNVGSRLLQKMGWSEGQGLGRKNQGRTQ 963
            :||.|.|   |....|.|.....:|.|..    .:.|.|:|||:||.|||.||.|||||.||...
Human   928 EPPEPKR---RKYGGISTASVDFEQPTRD----GLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVT 985

  Fly   964 IIEADGRSNYVGLGNKSGQ--MIPGNDYKSYIKKMMKQRYENA 1004
            .|||..|....|||.:...  :.....||..:.|.|..|:..|
Human   986 PIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEA 1028

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4887NP_001259859.1 DUF1777 115..>196 CDD:285811 10/80 (13%)
RRM_SF 255..335 CDD:302621 25/79 (32%)
ZnF_RBZ 341..364 CDD:197784 15/22 (68%)
RanBP2-type Zn finger 342..361 CDD:275375 13/18 (72%)
RRM1_RRM2_RBM5_like 387..473 CDD:240759 27/85 (32%)
OCRE_RBM5_like 623..678 CDD:293881 36/54 (67%)
OCRE repeat 1 628..635 CDD:293881 4/6 (67%)
OCRE repeat 2 636..643 CDD:293881 6/6 (100%)
OCRE repeat 3 644..651 CDD:293881 5/6 (83%)
OCRE repeat 4 652..659 CDD:293881 6/6 (100%)
OCRE repeat 5 661..668 CDD:293881 4/6 (67%)
G-patch 935..979 CDD:279867 26/43 (60%)
RBM10XP_024308225.1 RRM 86..>297 CDD:223796 78/320 (24%)
RRM1_RBM10 192..276 CDD:241197 28/105 (27%)
ZnF_RBZ 280..304 CDD:197784 15/23 (65%)
RanBP2-type Zn finger 282..301 CDD:275376 13/18 (72%)
RRM2_RBM10 363..449 CDD:241198 27/88 (31%)
OCRE_RBM10 663..726 CDD:293886 42/71 (59%)
OCRE repeat 1 669..676 CDD:293886 4/6 (67%)
OCRE repeat 2 677..684 CDD:293886 6/6 (100%)
OCRE repeat 3 685..692 CDD:293886 5/6 (83%)
OCRE repeat 4 693..700 CDD:293886 6/6 (100%)
OCRE repeat 5 702..709 CDD:293886 4/6 (67%)
G-patch 957..1001 CDD:307632 26/43 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165152937
Domainoid 1 1.000 124 1.000 Domainoid score I5526
eggNOG 1 0.900 - - E1_KOG0154
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H31330
Inparanoid 1 1.050 371 1.000 Inparanoid score I2130
Isobase 1 0.950 - 0 Normalized mean entropy S6718
OMA 1 1.010 - - QHG55750
OrthoDB 1 1.010 - - D786674at2759
OrthoFinder 1 1.000 - - FOG0002462
OrthoInspector 1 1.000 - - mtm8631
orthoMCL 1 0.900 - - OOG6_102541
Panther 1 1.100 - - O PTHR13948
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1642
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.720

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