DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4887 and gpatch2

DIOPT Version :10

Sequence 1:NP_608582.2 Gene:CG4887 / 33304 FlyBaseID:FBgn0031318 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_001313622.1 Gene:gpatch2 / 555214 ZFINID:ZDB-GENE-041014-260 Length:490 Species:Danio rerio


Alignment Length:364 Identity:87/364 - (23%)
Similarity:133/364 - (36%) Gaps:107/364 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   672 TYVLATPASTQA--ALQEVLADAEQKGEEESK-KAKEKEGGNKHDKVKVAKK-IVKDMEKWAKQL 732
            |.:||.||...|  ..:|.:...|.|..:.:| :.|:::...:.....||.: :|.:.|:....|
Zfish   174 TAMLAPPAKAPAVGGGRETVFGPEAKVSDANKNRVKKRKFTVQRLTQDVADEGVVVESEEAGHSL 238

  Fly   733 NQKKDYTAVATPQPILAN--EVATTSRGNQGGYADVGFSILEKKERGKLND-------YAPNPTV 788
            ..|.|:.........:::  |.::.|..:.||        |...:.|:..|       |...|  
Zfish   239 KDKMDFEEQKGSDEEMSDRCETSSVSNSSDGG--------LYTNDEGRQGDDEQSDWFYEGEP-- 293

  Fly   789 GPMNKLVNAYGGT-----------SDSEE----DNAASSQNTQSSAVVSGGGGAEESDYVDFHKL 838
                      ||.           .||.|    |...:|..|.:..::|.|              
Zfish   294 ----------GGACGIAGVVPWWERDSNELDLNDPVFNSILTGAFPLMSQG-------------- 334

  Fly   839 TCLLCKRAFQSLEILQKHLKMSTLH----KENLAKLNQNTSSSIEEALAYRDRAKERRLKYGESD 899
                .:|.||:....|..|:.|...    .:.|.:|:|:...|...:.|.||:.    |....||
Zfish   335 ----AQRGFQARLARQTCLEQSQGSSQGISDRLPRLSQDPHESWFSSGARRDQL----LWDSRSD 391

  Fly   900 PPPPNRSRERFEQEIKTLQSRQ-------------KQSTSATP-------------AMPISSSNV 938
                 || .|....:|| .|||             |:...|.|             |.|:..||:
Zfish   392 -----RS-HRKSCSLKT-ASRQTSGHLGSLCTGDIKRRRKAAPVGAQSSSGVVGESAAPLPDSNL 449

  Fly   939 GSRLLQKMGWSEGQGLGRKNQGRTQIIEADGRSNYVGLG 977
            |:|:||.|||:.|.|||.:.:|.|:.|.|..|....|||
Zfish   450 GNRMLQSMGWTPGTGLGPEGRGITEPIRASQRPKGAGLG 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4887NP_608582.2 U2AF_lg 93..>193 CDD:273727
RRM_SF 255..335 CDD:473069
ZnF_RBZ 341..364 CDD:197784
RanBP2-type Zn finger 342..361 CDD:275377
RRM1_RRM2_RBM5_like 387..473 CDD:409752
OCRE_RBM5_like 623..678 CDD:293881 3/5 (60%)
OCRE repeat 1 628..635 CDD:293881
OCRE repeat 2 636..643 CDD:293881
OCRE repeat 3 644..651 CDD:293881
OCRE repeat 4 652..659 CDD:293881
OCRE repeat 5 661..668 CDD:293881
G-patch 935..979 CDD:396249 21/43 (49%)
gpatch2NP_001313622.1 G-patch 447..488 CDD:396249 19/40 (48%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.