DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4887 and rbm5

DIOPT Version :10

Sequence 1:NP_608582.2 Gene:CG4887 / 33304 FlyBaseID:FBgn0031318 Length:1004 Species:Drosophila melanogaster
Sequence 2:XP_012820244.1 Gene:rbm5 / 550032 XenbaseID:XB-GENE-494987 Length:838 Species:Xenopus tropicalis


Alignment Length:889 Identity:289/889 - (32%)
Similarity:435/889 - (48%) Gaps:118/889 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 RSREHSRPWNRNNNHDDRSRSNERNT---RHRDHRMYNGGGSNHNRDRDRDRDREQDRERDRDRD 226
            ||..:...::|::..|..:||..|::   |:||.|      |:...|..||.|     ..:|||.
 Frog    12 RSGRYGSAFDRDDRDDRDTRSRRRDSEYKRYRDER------SSERYDDYRDYD-----SPERDRM 65

  Fly   227 RDRERRGS----SDYDSDEGHM----RRNKYRSTTEALNIIIIFGLTKEMTRADIMSELIK--VN 281
            ||||||.|    ..|.||..:|    |::.|....|: ..|::.||...:...|| .||::  ..
 Frog    66 RDRERRNSDRSEDGYHSDGDYMDHDYRQDYYMDEKES-KTIMLRGLPININENDI-RELVESFEG 128

  Fly   282 MEPACIRIIRKQGTDSSRGIAFVEFNTVEEAKQWMDITQGVLKLNDERVSMRYSHKR--IQDWNC 344
            .:||.:|::::: |..|||.|||||..:::|.:||:..|..|.:..:.::|.||:.|  .:||.|
 Frog   129 PQPADVRLMKRK-TGLSRGFAFVEFYHLQDATRWMEANQKKLVIQGKTIAMHYSNPRPKFEDWLC 192

  Fly   345 NKCGVCNFKFRFYCFVCKTSREDSETTFSSGSEGVDEV------STILTKKIMLRNLDALTNEEA 403
            ||||:.||:.|..||.|..::.:|:....|||....:.      |..::..|:|||:...|..::
 Frog   193 NKCGLYNFRRRLKCFRCGAAKAESDLEAPSGSSDAPQSTDYYSDSGYVSSAIILRNIGPHTVVDS 257

  Fly   404 VLTALQLHLKDLSKTVSKVLISRDSLTQASRGICYLHFDTLVDSMNVHNALTALDPPLTLDDRVV 468
            :|:||..:   :|..||.:.:.:|..||.:||..::...:.:::..:...|..|.|||.:|.:.|
 Frog   258 ILSALAPY---VSLVVSNIRLIKDKQTQQNRGFAFVQLPSTLEASQLLQILQTLHPPLKIDGKTV 319

  Fly   469 AITYCIDLEEQQALPKNPKELAVKDSTVNSGNISA--------VSPSGLGGNYTLADVPRLAEYS 525
            .:.:.....:...||...:   |...:|.|..|:|        ...||.||.|.... |....| 
 Frog   320 GVDFAKSARKDLVLPDGHR---VSAFSVASTAIAAAQWSSTQQAQQSGEGGEYAYLQ-PGQEGY- 379

  Fly   526 ASLYASNPAEHAYYVQYYTEYYTADINKNNRDSHLTEANSGAAV--ALSAIQRKQKKMSSIETTI 588
                    |.:....|.|..:|.|......: |...:|...|.|  ..||:..:..:|.....:.
 Frog   380 --------ANYGQCSQDYQPFYQAQTGAAEQ-STAPQAEGSAPVPATTSAVVCQSPQMYQQPGSP 435

  Fly   589 TAAATAAAQAAAQVKATLAAQVASAPKG-NDGKIYPTPDVTQYQYDETSGYYYDSTTGLYYNAHS 652
            |.:.|:.|........|...:.|:.|.. ..|..|..||.:.|||||:||||||..|||||:.:|
 Frog   436 TQSGTSTAANTTPASTTSTTEEAAPPNAVIPGVKYSVPDTSTYQYDESSGYYYDPQTGLYYDPNS 500

  Fly   653 QYYYNNETGAYLYWDQRRSTYVLATPASTQAALQEVLADAEQKGEEESKKAKEKEGGNKHDKVKV 717
            |||||:.|..|||||..:.||:.|...:.|:..|...|:|....|.:.||.|.|.        |.
 Frog   501 QYYYNSLTQQYLYWDGEKQTYLPAADGAGQSGAQPNGANAGSSKEGKEKKEKPKS--------KT 557

  Fly   718 AKKIVKDMEKWAKQLNQKKDYTAVATPQPILANEVATTSRGNQGGYADVGFSILEKKERGKL-ND 781
            |::|.||||:|||.||::|: ....:.||:.|.:    ....:...||.||::.|||:...| ..
 Frog   558 AQQIAKDMERWAKSLNKQKE-NFKNSFQPLSARD----EERKESAAADAGFALFEKKQGALLERQ 617

  Fly   782 YAPNPTV--------GPMNK-LVNAYGGTSDSEEDNAASSQNTQSSAVVSGGGGAEESDYVDFHK 837
            :.|:..:        .|.|| ||.||.|.||:||         :|..::   |..:|...:|:.|
 Frog   618 FMPDMMMMVNTEEEEKPPNKALVAAYSGDSDNEE---------ESERLL---GAVDEEKLLDWKK 670

  Fly   838 LTCLLCKRAFQSLEILQKHLKMSTLHKENLAKLNQNTSSSIE-EAL-------AYRDRAKERRLK 894
            |.||||:|.|.:.:.|.:|.::|.|||:||....::..|..| |||       .|||||.|||.|
 Frog   671 LACLLCRRQFPNKDALTRHQQLSDLHKQNLEVYRRSKMSEQELEALELKEREAKYRDRAAERREK 735

  Fly   895 YGESDPPPPNRSRERFEQEIKTLQSRQKQSTSATPAMPISSSNVGSRLLQKMGWSEGQGLGRKNQ 959
            ||..:||.|  .|:||:..:...:...|..        |.:||:|:::||.|||.||.|||||:|
 Frog   736 YGIPEPPEP--KRKRFDPTVVNYEQPTKDG--------IDNSNIGNKMLQAMGWKEGSGLGRKSQ 790

  Fly   960 GRTQIIEADGRSNYVGLGNKSGQ--MIPGNDYKSYIKKMMKQRY 1001
            |.|..|:|..|....|||.|...  :...:.||..::|.|..|:
 Frog   791 GITAPIQAQVRMRGAGLGAKGSSYGVNTSDSYKDAVRKAMFARF 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4887NP_608582.2 U2AF_lg 93..>193 CDD:273727 8/30 (27%)
RRM_SF 255..335 CDD:473069 25/81 (31%)
ZnF_RBZ 341..364 CDD:197784 13/22 (59%)
RanBP2-type Zn finger 342..361 CDD:275377 11/18 (61%)
RRM1_RRM2_RBM5_like 387..473 CDD:409752 23/85 (27%)
OCRE_RBM5_like 623..678 CDD:293881 33/54 (61%)
OCRE repeat 1 628..635 CDD:293881 4/6 (67%)
OCRE repeat 2 636..643 CDD:293881 6/6 (100%)
OCRE repeat 3 644..651 CDD:293881 5/6 (83%)
OCRE repeat 4 652..659 CDD:293881 6/6 (100%)
OCRE repeat 5 661..668 CDD:293881 4/6 (67%)
G-patch 935..979 CDD:396249 24/43 (56%)
rbm5XP_012820244.1 RRM1_RBM5 98..184 CDD:410146 28/88 (32%)
zf-RanBP 186..213 CDD:395516 13/26 (50%)
RanBP2-type Zn finger 190..209 CDD:275376 11/18 (61%)
RRM2_RBM5 240..325 CDD:410149 23/87 (26%)
PRK10263 <333..>513 CDD:236669 60/193 (31%)
OCRE_RBM5 471..526 CDD:293887 33/54 (61%)
OCRE repeat 1 476..483 CDD:293887 4/6 (67%)
OCRE repeat 2 484..491 CDD:293887 6/6 (100%)
OCRE repeat 3 492..499 CDD:293887 5/6 (83%)
OCRE repeat 4 500..507 CDD:293887 6/6 (100%)
OCRE repeat 5 509..516 CDD:293887 4/6 (67%)
G-patch 767..810 CDD:396249 24/42 (57%)

Return to query results.
Submit another query.