Sequence 1: | NP_001259859.1 | Gene: | CG4887 / 33304 | FlyBaseID: | FBgn0031318 | Length: | 1004 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001101656.1 | Gene: | Rbm6 / 315997 | RGDID: | 1560367 | Length: | 1119 | Species: | Rattus norvegicus |
Alignment Length: | 1258 | Identity: | 266/1258 - (21%) |
---|---|---|---|
Similarity: | 413/1258 - (32%) | Gaps: | 476/1258 - (37%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 SFSGGSEN------EGGRGSDY-YRSRPGSRYSRSRSRSRE------RNRS-HGGIRHRNSRSRS 58
Fly 59 RDRDRSPVFRNDQHRGGRGG----AGNGDPDLYHSLINDDYRDQDERNYNSRS-NFENRQFRRHD 118
Fly 119 SFDRRHRDRDGE----SDRELNDYEYEQRSR-----------DLDSRDR------------SSTD 156
Fly 157 RDWYHNRSRSREHS--RPWNRNNNHDD-RSRS--------------------------------- 185
Fly 186 ----NERNTRHRDHRM------YNGGGSNHNRDRD-------------RDRDREQDRERDRDR-- 225
Fly 226 ------------------DRDRERRGSSDYDSDE------------------------GHMRRN- 247
Fly 248 -------KYR---STTEALNIIIIFGLTKEMTRADIMSELIKVNMEPACIRIIRKQGTDSSRGIA 302
Fly 303 FVEFNTVEEAKQWMDITQGVLKLNDERVSMRYSHKRIQDWNCNKCGVCNFKFRFYCFVCK----- 362
Fly 363 ----------------------------------------------------------------- 362
Fly 363 -TSREDSETTFSSGSEGVDEVSTILTKKIMLRNLDALTNEEAVLTALQ--LHLKDLSKTVSKVLI 424
Fly 425 SRDSLTQASRGICYLHFDTLVDSMNVHNALTALDPPLTLDDRVVAITYCIDLEEQQALPKNPKEL 489
Fly 490 AVKDSTVNSGNISAVSPSGLGGNYTLADVPRLAEYSASLYASNPAEHAYYVQYYTEYYTADINKN 554
Fly 555 NRDSHLTEANSGAAVALSAIQRKQKKMSSIETTITAAATAAAQAAAQVKATLAAQVASAPKGNDG 619
Fly 620 KIYPTPDVTQYQYDETSGYYYDSTTGLYYNAHSQYYYNNETGAYLYWDQRRSTYVLATPASTQAA 684
Fly 685 LQEVLA--DAEQKGEEESKKAKEKEGGNKHDKVKVAKKIVKDMEKWAKQLNQKKDYTAVATPQP- 746
Fly 747 -ILANEVATTSRGNQGGYADVGFSILEKKERGKLNDYAPNPTVGPMNKLVNAYGGTSDSEED--- 807
Fly 808 --------NAASSQNTQSSAVVSGGGGAEESDYVDFHKLTCLLCKRAFQSLEILQKHLKMSTLHK 864
Fly 865 ENL---AKLNQNTSSSIEEALAYRD-RAKERRLKYGESDP-------PPPNRSRERFEQEIKTLQ 918
Fly 919 SR-QKQSTSATPAMPISSSNVGSRLLQKMGWSEGQGLGRKNQGRTQIIEADGRSNYVGLGNKSGQ 982
Fly 983 MI---PGNDYKSYIKKMMKQRYE 1002 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG4887 | NP_001259859.1 | DUF1777 | 115..>196 | CDD:285811 | 30/147 (20%) |
RRM_SF | 255..335 | CDD:302621 | 18/79 (23%) | ||
ZnF_RBZ | 341..364 | CDD:197784 | 6/93 (6%) | ||
RanBP2-type Zn finger | 342..361 | CDD:275375 | 4/18 (22%) | ||
RRM1_RRM2_RBM5_like | 387..473 | CDD:240759 | 22/87 (25%) | ||
OCRE_RBM5_like | 623..678 | CDD:293881 | 12/54 (22%) | ||
OCRE repeat 1 | 628..635 | CDD:293881 | 3/6 (50%) | ||
OCRE repeat 2 | 636..643 | CDD:293881 | 5/6 (83%) | ||
OCRE repeat 3 | 644..651 | CDD:293881 | 3/6 (50%) | ||
OCRE repeat 4 | 652..659 | CDD:293881 | 1/6 (17%) | ||
OCRE repeat 5 | 661..668 | CDD:293881 | 0/6 (0%) | ||
G-patch | 935..979 | CDD:279867 | 15/43 (35%) | ||
Rbm6 | NP_001101656.1 | YjbI | <92..251 | CDD:224276 | 47/183 (26%) |
RRM1_RBM6 | 456..533 | CDD:240760 | 18/76 (24%) | ||
RRM2_RBM6 | 651..737 | CDD:241007 | 25/111 (23%) | ||
OCRE | 763..818 | CDD:304914 | 22/140 (16%) | ||
OCRE repeat 1 | 769..776 | CDD:293880 | 2/17 (12%) | ||
OCRE repeat 2 | 785..792 | CDD:293880 | 3/49 (6%) | ||
OCRE repeat 3 | 793..800 | CDD:293880 | 5/6 (83%) | ||
OCRE repeat 4 | 801..807 | CDD:293880 | 3/5 (60%) | ||
OCRE repeat 5 | 811..818 | CDD:293880 | 3/6 (50%) | ||
G-patch | 1048..1091 | CDD:279867 | 15/44 (34%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166346523 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG0154 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D786674at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | LDO | PTHR13948 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
7 | 6.810 |