DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4887 and Rbm6

DIOPT Version :9

Sequence 1:NP_001259859.1 Gene:CG4887 / 33304 FlyBaseID:FBgn0031318 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_001101656.1 Gene:Rbm6 / 315997 RGDID:1560367 Length:1119 Species:Rattus norvegicus


Alignment Length:1258 Identity:266/1258 - (21%)
Similarity:413/1258 - (32%) Gaps:476/1258 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SFSGGSEN------EGGRGSDY-YRSRPGSRYSRSRSRSRE------RNRS-HGGIRHRNSRSRS 58
            |||.|:.:      :||.|..: :|   |..:|.|..:||:      |||. |.|        ..
  Rat    72 SFSYGARDGPHADYQGGEGPGHDFR---GGDFSSSDFQSRDSAQLDFRNRDIHSG--------DF 125

  Fly    59 RDRDRSPVFRNDQHRGGRGG----AGNGDPDLYHSLINDDYRDQDERNYNSRS-NFENRQFRRHD 118
            |||:..|:    .:|||.|.    .|...|.:       :|||:|....:.|| :.....||...
  Rat   126 RDREGPPM----DYRGGDGAPIDYRGRETPHI-------NYRDRDSHTADFRSRDAPPSDFRGRG 179

  Fly   119 SFDRRHRDRDGE----SDRELNDYEYEQRSR-----------DLDSRDR------------SSTD 156
            ::|...|.|||.    ..|:|:|.::..|.:           |||.||:            ::||
  Rat   180 AYDLDFRGRDGSHADFRGRDLSDLDFRSRDQSRSDFRNREVSDLDFRDKDGAQVDFRGRGSATTD 244

  Fly   157 RDWYHNRSRSREHS--RPWNRNNNHDD-RSRS--------------------------------- 185
            .|:   |:|...||  |..:|:..:.| |.|.                                 
  Rat   245 LDF---RNRDAPHSDFRGRHRSRTYQDFRGREVGPCMEFKDREMPPVDPKVLDYIQPPAQEREHS 306

  Fly   186 ----NERNTRHRDHRM------YNGGGSNHNRDRD-------------RDRDREQDRERDRDR-- 225
                |:|.....||.:      ...|...|:..|:             .|....|...:|:|:  
  Rat   307 GMNMNKREESTHDHTVERPAFGVQKGEFEHSETREGETQSGTFEHESQSDFQNSQSPVQDQDKPK 371

  Fly   226 ------------------DRDRERRGSSDYDSDE------------------------GHMRRN- 247
                              |.|...|..:||.|.|                        |.|.|: 
  Rat   372 LSAGEQQSSDAGLFKEEGDLDFLGRQDTDYRSMEYCDVDHRLPGSQIFGYGQSKSFPQGKMSRDA 436

  Fly   248 -------KYR---STTEALNIIIIFGLTKEMTRADIMSELIKVNMEPACIRIIRKQGTDSSRGIA 302
                   .||   |..:...:|.:.|:.:..|:.:|::.....:..|.....:::..|....|..
  Rat   437 QQDLQDQDYRTGPSEEKPNRLIRLNGVPENATKEEILNAFRTSDGLPVKELQLKEYNTGYDYGYV 501

  Fly   303 FVEFNTVEEAKQWMDITQGVLKLNDERVSMRYSHKRIQDWNCNKCGVCNFKFRFYCFVCK----- 362
            .|||:.:|:|...|:..||.|.::|:.|::.|.... ..|.|.:|.......:..|..||     
  Rat   502 CVEFSLLEDAIGCMEANQGTLMIHDKEVTLEYVPSP-DFWYCKRCKASTGGHQSCCSYCKGPKEE 565

  Fly   363 ----------------------------------------------------------------- 362
                                                                             
  Rat   566 VKQELVSYPQPQKTSIPVPSEKQPNQPRPVDKEHELRKREEGQESRLGHQKRETERYFPHSRREG 630

  Fly   363 -TSREDSETTFSSGSEGVDEVSTILTKKIMLRNLDALTNEEAVLTALQ--LHLKDLSKTVSKVLI 424
             |.|.|.|....||....|..|    |.|||:.:...|..|.::..|:  :||     |.:.|.|
  Rat   631 LTFRRDREKESWSGETRQDGES----KTIMLKRIYRSTPPEVIVEVLEPYVHL-----TTANVRI 686

  Fly   425 SRDSLTQASRGICYLHFDTLVDSMNVHNALTALDPPLTLDDRVVAITYCIDLEEQQALPKNPKEL 489
            .::..........::..|:..:::.|...|..||||.::|.::||:                 .|
  Rat   687 IKNRTGPMGHTYGFIDLDSHAEALRVVKILQNLDPPFSIDGKMVAV-----------------NL 734

  Fly   490 AVKDSTVNSGNISAVSPSGLGGNYTLADVPRLAEYSASLYASNPAEHAYYVQYYTEYYTADINKN 554
            |......:||:.|                                :|.:|  |..:.|..|....
  Rat   735 ATGKRRNDSGDHS--------------------------------DHMHY--YQGKKYFRDRRGG 765

  Fly   555 NRDSHLTEANSGAAVALSAIQRKQKKMSSIETTITAAATAAAQAAAQVKATLAAQVASAPKGNDG 619
            ||:|.           .|:...:|.:.||.:.                                 
  Rat   766 NRNSD-----------WSSDTNRQGQQSSSDC--------------------------------- 786

  Fly   620 KIYPTPDVTQYQYDETSGYYYDSTTGLYYNAHSQYYYNNETGAYLYWDQRRSTYVLATPASTQAA 684
                      |.||..:|||||...|.||:.::|                               
  Rat   787 ----------YIYDSATGYYYDPLAGTYYDPNTQ------------------------------- 810

  Fly   685 LQEVLA--DAEQKGEEESKKAKEKEGGNKHDKVKVAKKIVKDMEKWAKQLNQKKDYTAVATPQP- 746
             |||..  |.|...|||.|:.|....|..:.|.:.:|:..|  ||..:.:.:.::.|:...|.| 
  Rat   811 -QEVYVPQDPESPEEEEIKEKKSTSQGKSNSKKETSKRDGK--EKKDRGVTKFQESTSEGKPPPE 872

  Fly   747 -ILANEVATTSRGNQGGYADVGFSILEKKERGKLNDYAPNPTVGPMNKLVNAYGGTSDSEED--- 807
             :....:..|                .|||...    .|...|.|:..|:..|||.||.||:   
  Rat   873 DVFKKPLPPT----------------VKKEESP----PPPKVVNPLIGLLGEYGGDSDYEEEEEE 917

  Fly   808 --------NAASSQNTQSSAVVSGGGGAEESDYVDFHKLTCLLCKRAFQSLEILQKHLKMSTLHK 864
                    .||..|..:.......    ||....|::||.||||:|.|.:.|:|.||.::|.|||
  Rat   918 EQAPPVQPRAAQPQPREELTKKEN----EEDKLTDWNKLACLLCRRQFPNKEVLTKHQQLSDLHK 978

  Fly   865 ENL---AKLNQNTSSSIEEALAYRD-RAKERRLKYGESDP-------PPPNRSRERFEQEIKTLQ 918
            :||   .|:.|:     |:.|||.: |.:|.|.|...||.       ..|.|.|.::.:|..:.:
  Rat   979 QNLEIHRKIKQS-----EQELAYLERREREGRFKEKGSDRREKLQSFDSPERKRIKYSRETDSDR 1038

  Fly   919 SR-QKQSTSATPAMPISSSNVGSRLLQKMGWSEGQGLGRKNQGRTQIIEADGRSNYVGLGNKSGQ 982
            :. .|:.|        .:|:.|....|..||.:|.|||..:.|.....|.:||..  |.|...|:
  Rat  1039 NPVDKEDT--------DTSSKGGCTQQATGWRKGAGLGYSHPGLGSSEEIEGRMR--GSGGAPGR 1093

  Fly   983 MI---PGNDYKSYIKKMMKQRYE 1002
            ..   ....|:..::::|..||:
  Rat  1094 TSKRQSNETYRDAVRRVMFARYK 1116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4887NP_001259859.1 DUF1777 115..>196 CDD:285811 30/147 (20%)
RRM_SF 255..335 CDD:302621 18/79 (23%)
ZnF_RBZ 341..364 CDD:197784 6/93 (6%)
RanBP2-type Zn finger 342..361 CDD:275375 4/18 (22%)
RRM1_RRM2_RBM5_like 387..473 CDD:240759 22/87 (25%)
OCRE_RBM5_like 623..678 CDD:293881 12/54 (22%)
OCRE repeat 1 628..635 CDD:293881 3/6 (50%)
OCRE repeat 2 636..643 CDD:293881 5/6 (83%)
OCRE repeat 3 644..651 CDD:293881 3/6 (50%)
OCRE repeat 4 652..659 CDD:293881 1/6 (17%)
OCRE repeat 5 661..668 CDD:293881 0/6 (0%)
G-patch 935..979 CDD:279867 15/43 (35%)
Rbm6NP_001101656.1 YjbI <92..251 CDD:224276 47/183 (26%)
RRM1_RBM6 456..533 CDD:240760 18/76 (24%)
RRM2_RBM6 651..737 CDD:241007 25/111 (23%)
OCRE 763..818 CDD:304914 22/140 (16%)
OCRE repeat 1 769..776 CDD:293880 2/17 (12%)
OCRE repeat 2 785..792 CDD:293880 3/49 (6%)
OCRE repeat 3 793..800 CDD:293880 5/6 (83%)
OCRE repeat 4 801..807 CDD:293880 3/5 (60%)
OCRE repeat 5 811..818 CDD:293880 3/6 (50%)
G-patch 1048..1091 CDD:279867 15/44 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166346523
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0154
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D786674at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13948
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.810

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