DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4887 and Aggf1

DIOPT Version :9

Sequence 1:NP_001259859.1 Gene:CG4887 / 33304 FlyBaseID:FBgn0031318 Length:1004 Species:Drosophila melanogaster
Sequence 2:XP_038959383.1 Gene:Aggf1 / 310005 RGDID:1310888 Length:705 Species:Rattus norvegicus


Alignment Length:638 Identity:136/638 - (21%)
Similarity:222/638 - (34%) Gaps:210/638 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   522 AEYSASLYASNPAEHAYYVQYYTEYYTADINKNNRDSHLTEANSGAAVALSAIQRKQKKMSSIET 586
            |.:|:|.|            ||..||..| |..::::.|. |.....|..||:..|.:.....|:
  Rat    94 AAWSSSDY------------YYQTYYKDD-NLPSKETELC-AQQSPYVQASALDSKAESRIDSES 144

  Fly   587 TIT-------------------AAATAAAQAAAQVKATLAAQVASAPKGNDGKIYPTPDVTQYQY 632
            ..|                   .:|:|.|:.:|...::||..:.:|.:.       ....|.:.|
  Rat   145 YSTEMAESVNHRHEDHFTSDSQESASALAEGSALEGSSLAESLRAAAEA-------AVSQTSFTY 202

  Fly   633 DETSGYYYDSTTGLYYNAHSQYYYNNETGAYLYWDQRRSTYVLATPASTQAALQEVLADAEQKGE 697
            ||::|.|:|.:||.||::.:|.||:..||.|.|.|.....|..    .::..||.....:.:..:
  Rat   203 DESTGLYFDHSTGFYYDSENQLYYDASTGIYYYCDVESGRYQF----HSRVHLQPYQTSSTKPSK 263

  Fly   698 EESKKAKEKEGG-----NKHDKVKVAKKIV--------KDMEKWAKQLNQKKDYTAVATPQPILA 749
            ::..|.:.||.|     .:.|.....:|:.        :|......:...:.|.:..::|.| ||
  Rat   264 DKKLKKRRKEPGFWTATEEKDLSSEDQKVCSIEYINCSEDENSGNVKKKARTDTSHKSSPLP-LA 327

  Fly   750 NEVATTSRGNQGGYADVGFSILEKKER--------GKLND------YAPNPTVGPMNKLVNAYGG 800
            ..|:.....:.|..|..  |:.:::||        |::.|      |..:|:.|....     ..
  Rat   328 GAVSGDMVESPGDEASA--SLKDERERASESEPEEGEITDSQSECSYDGDPSSGDRQS-----SE 385

  Fly   801 TSDSEEDN-------------------------------------------------AAS----- 811
            .||.|:|.                                                 |.|     
  Rat   386 ESDDEDDEEKIWPPCIRVIVIRSPVLQMGSLFIITAVSPATIGREKDMEHTVRIPEVAVSKFHAE 450

  Fly   812 -------------SQNTQSSAVVSG-----------------GGGAEESDYV-DFH----KLTCL 841
                         .|.:|:..:|:|                 |...:..:.| .||    ..||.
  Rat   451 VYFDHDLQSYVLVDQGSQNGTIVNGKQILQPKTKCDPYILEHGDEVKIGETVLSFHIHPGSETCD 515

  Fly   842 LCK----RAFQSLEILQKHLKMSTLHKEN--------LAKLN-----QNTSSSIEEAL---AYRD 886
            .|:    ||...|:...:.|....|.||.        |.|:.     |||....|:||   .|:|
  Rat   516 GCEPGQVRAHLRLDKKDEPLVGPALSKEEKELERRKALKKIRVKYGLQNTDYEDEKALKNPKYKD 580

  Fly   887 RAKERRLKYGESDPPPPNRSRERFEQEIKTLQSRQKQSTSATPAMPISSSNVGSRLLQKMGWSEG 951
            ||.:||.:.|         |...|          |:....|:....|:.||.|.::|:||||.:|
  Rat   581 RAGKRREQVG---------SEGTF----------QRDDAPASVHSEITDSNKGRKMLEKMGWKKG 626

  Fly   952 QGLGRKNQGRTQIIEADGRSNYVGLGNKSGQMIPGNDYKSYIKKMMKQRYENA 1004
            :|||:...|....|:...|..:.|||......|   |...:::...|:.::.|
  Rat   627 EGLGKDGGGMKTPIQLQLRRTHAGLGTGKPSSI---DDVHFLQNKSKKNWDKA 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4887NP_001259859.1 DUF1777 115..>196 CDD:285811
RRM_SF 255..335 CDD:302621
ZnF_RBZ 341..364 CDD:197784
RanBP2-type Zn finger 342..361 CDD:275375
RRM1_RRM2_RBM5_like 387..473 CDD:240759
OCRE_RBM5_like 623..678 CDD:293881 20/54 (37%)
OCRE repeat 1 628..635 CDD:293881 3/6 (50%)
OCRE repeat 2 636..643 CDD:293881 3/6 (50%)
OCRE repeat 3 644..651 CDD:293881 4/6 (67%)
OCRE repeat 4 652..659 CDD:293881 3/6 (50%)
OCRE repeat 5 661..668 CDD:293881 3/6 (50%)
G-patch 935..979 CDD:279867 18/43 (42%)
Aggf1XP_038959383.1 OCRE_VG5Q 193..246 CDD:293883 20/63 (32%)
OCRE repeat 1 198..205 CDD:293883 3/6 (50%)
OCRE repeat 2 206..213 CDD:293883 3/6 (50%)
OCRE repeat 3 214..221 CDD:293883 4/6 (67%)
OCRE repeat 4 222..228 CDD:293883 3/5 (60%)
OCRE repeat 5 230..237 CDD:293883 4/6 (67%)
FHA 401..507 CDD:238017 9/105 (9%)
G-patch 611..652 CDD:396249 16/40 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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