DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4887 and rbm10

DIOPT Version :10

Sequence 1:NP_608582.2 Gene:CG4887 / 33304 FlyBaseID:FBgn0031318 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_593368.1 Gene:rbm10 / 2542526 PomBaseID:SPAC57A7.13 Length:565 Species:Schizosaccharomyces pombe


Alignment Length:836 Identity:167/836 - (19%)
Similarity:268/836 - (32%) Gaps:323/836 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 GGGSNHNRDRDRDRDREQDRERDRDRDRDRERRGSSDYDSDEGHMRRNKYRSTTEALNI----II 260
            |..|::..|....||.:.:...|..|..|..|        .:|:..|::....:..:.:    ||
pombe    18 GSTSSNISDNCASRDYDVNISSDNPRLLDSYR--------PKGNYGRDRNSPLSRHIGVPNQEII 74

  Fly   261 IFGLTKEMTRADIMSELIKVNMEPACIRIIRKQGTDSSRGIAFVEFNTVEEAKQWMDITQGVLKL 325
            :.|||.|:....|...|.....:.:.:.:||::.|..||..||.:|.:::::|.||:.....|.:
pombe    75 LQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKFVSLQDSKDWMEANFPTLVI 139

  Fly   326 NDERVSMRYS---HKRIQDWNCNKCGVCNFKFRFYCFVCKTSREDSETTFS----SGSEGVDEVS 383
            :...||:|:|   .::|:.|.|..|.:.|:.:|..||.|:..|..:.....    |...|..:||
pombe   140 DGIDVSVRFSRAAREQIEGWCCQNCDILNYSYRESCFKCRVPRNQASIAIGNHKISKRNGDMDVS 204

  Fly   384 TILTKKIMLRNLDALTNEEAVLTALQLHLKDLSK---TVSKVLISRDSLTQASRGICYLHFDTLV 445
            .:.:..::|||||...:||.:       .|.|||   .|.:|.:.|.....|..|...|.|.   
pombe   205 DVPSVYLILRNLDRSLSEETL-------WKGLSKLEIDVQRVFMIRYKFNDAFCGYAILEFK--- 259

  Fly   446 DSMNVHNALTALDPPLTLDDRVVAITYCIDLEEQQALPKNPKELAVKDSTVNSGNISAVSPSGLG 510
                                         |::|                                
pombe   260 -----------------------------DVDE-------------------------------- 263

  Fly   511 GNYTLADVPRLAEYSASLYASNPAEHAYYVQYYTEYYTADINKNNRDSHLTEANSGAAVALSAIQ 575
                                                                             
pombe   264 ----------------------------------------------------------------- 263

  Fly   576 RKQKKMSSIETTITAAATAAAQAAAQVKATLAAQVASAPKGNDGKIYPTPDVTQYQYDETSGYYY 640
                         :|.|...|:.......|||::..|....:||.:.|.                
pombe   264 -------------SAKALMKARTYPGKGFTLASRKVSVDYIHDGVLIPA---------------- 299

  Fly   641 DSTTGLYYNAHSQYYYNNETGAYLYWDQRR--STYVLATPASTQAALQEVLADAEQ-KGEEESKK 702
                   |...:::.:..:||..:|||...  |.||   |..         .|.:| |..|.:||
pombe   300 -------YTESARWQFPTKTGYLVYWDPELYCSIYV---PEG---------IDTDQFKPIEVNKK 345

  Fly   703 AKEKEGGNKHDKVKV--AKKIVKDMEKWAKQLNQKKDYTAVATPQPILANEVATTSRGNQGGYAD 765
            .|:::.....:.:.|  :||:...:::|                     |:.             
pombe   346 PKKEKRARSSNYIDVPASKKVATSLQRW---------------------NDA------------- 376

  Fly   766 VGFSILEKKERGKLNDYAPNPTVGPMNKLVNAYGGTSDSEEDNAASSQNTQSSAVVSGGGGAEES 830
                   :||   |.|..|:.                 |||:..........||::         
pombe   377 -------QKE---LKDNIPDL-----------------SEEEEKLLLHFVWKSALI--------- 405

  Fly   831 DYVDFHKLTCLLCKRAFQSLEILQKHLKMSTLHKENLAKLNQNTSSSIE---------EALAYRD 886
                     |:||:|.|||...:.||:..|.:|..||.  |....||.|         |::.|||
pombe   406 ---------CVLCERKFQSWGHVVKHITQSIMHNNNLK--NHELVSSAELLMHRVRQTESVDYRD 459

  Fly   887 RAKERRLKYGESDPPPPNRSRERFEQEIKTLQSRQKQSTSATPAMPISSSNVGSRLLQKMGWSEG 951
            ||.|||:        .|..|.:...:..|:.|.....||          |||..::|..|||::|
pombe   460 RATERRI--------VPAASSDTIVEAKKSSQGSSFHST----------SNVSMKMLNSMGWNKG 506

  Fly   952 QGLGRKNQGRTQIIEADGRSNYVGLGNKSGQ----MIPGNDYKSYIKKMMKQRYEN 1003
            .|||....|..:.|:.......||||||..:    |.|.:..|...:.:..|..:|
pombe   507 SGLGTNENGIKEAIQPTMYLPGVGLGNKGSKIQINMTPVDRVKDRARSLYFQNDKN 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4887NP_608582.2 U2AF_lg 93..>193 CDD:273727
RRM_SF 255..335 CDD:473069 23/83 (28%)
ZnF_RBZ 341..364 CDD:197784 8/22 (36%)
RanBP2-type Zn finger 342..361 CDD:275377 7/18 (39%)
RRM1_RRM2_RBM5_like 387..473 CDD:409752 18/88 (20%)
OCRE_RBM5_like 623..678 CDD:293881 10/56 (18%)
OCRE repeat 1 628..635 CDD:293881 0/6 (0%)
OCRE repeat 2 636..643 CDD:293881 0/6 (0%)
OCRE repeat 3 644..651 CDD:293881 1/6 (17%)
OCRE repeat 4 652..659 CDD:293881 0/6 (0%)
OCRE repeat 5 661..668 CDD:293881 3/6 (50%)
G-patch 935..979 CDD:396249 17/43 (40%)
rbm10NP_593368.1 RRM1_RRM2_RBM5_like 69..149 CDD:409752 23/79 (29%)
RRM 211..281 CDD:214636 23/218 (11%)
G-patch 490..534 CDD:396249 18/53 (34%)
Blue background indicates that the domain is not in the aligned region.

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