DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4887 and LOC100498473

DIOPT Version :10

Sequence 1:NP_608582.2 Gene:CG4887 / 33304 FlyBaseID:FBgn0031318 Length:1004 Species:Drosophila melanogaster
Sequence 2:XP_002935683.3 Gene:LOC100498473 / 100498473 XenbaseID:XB-GENE-29084255 Length:1605 Species:Xenopus tropicalis


Alignment Length:1125 Identity:225/1125 - (20%)
Similarity:369/1125 - (32%) Gaps:424/1125 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 GGIRHRNSRSRSRDRDRSPVFR----------NDQHRGGRGG----------AGNGDPDL--YHS 89
            ||....:|..:|.|.|    ||          |::.:.|..|          .|:.|.||  ..:
 Frog   733 GGSSQHSSCPQSLDMD----FRDRINTKNMEANNKLKNGMAGPSKAESSSVVLGSSDQDLRKKEN 793

  Fly    90 LINDD--------------YRDQDERNYNSRSNFENRQFRRHDSFDRRHRDRDGESDRELNDYEY 140
            ::.|.              .:|:|.|...|.:..|   ..||.|.              |.|: .
 Frog   794 IVQDSKGGISDRVVKTGYVQKDEDLRAGESATPAE---LLRHGSL--------------LFDF-L 840

  Fly   141 EQRSRDLDSRDRSSTDRDWYHNRSRSREHSRPWNRNNNHDDRSR--------------------- 184
            :..:::|  :.:.:||.|...|..|:     .:.::....||..                     
 Frog   841 QLAAQEL--KGKQATDIDAGGNEKRT-----IFTKHTGDPDRKAQVIQGTTSGKPTIVPNSQAAM 898

  Fly   185 ----SNERNTRHRDHR--MYNGGGSNHNRDRDRDRDREQDRERDRDRDRDRERRGSSDYDSDEGH 243
                |.:.:.|:.|::  ...||.|...|..:| ..||..::..:|:|   .||.|    ..|| 
 Frog   899 EFLGSEDTDYRNMDYKDTDLRGGYSLEKRSLER-TFREDLQQGSKDKD---YRRSS----LPEG- 954

  Fly   244 MRRNKYRSTTEALNIIIIFGLTKEMTRADIMSELIKVNMEPACIRIIRKQGTD-------SSRGI 301
                       |..||.:..|....:|.:|::.|..||..|:       .|.:       .|.|.
 Frog   955 -----------ATRIIWLENLPMGASREEILNALSTVNKLPS-------HGVNLIGYIPGYSLGS 1001

  Fly   302 AFVEFNTVEEAKQWMDITQGVLKLNDERVSMRY---SHKRIQDWNCNKCGVCNFKFRFYCFVCKT 363
            ..|||:.||||...|:..:|.|....::||::|   |.|    |:|.:|.|.|...:..|:.|..
 Frog  1002 VCVEFSLVEEAVGCMEACKGFLLFRGKKVSLKYIPNSEK----WSCQQCKVVNVLSKERCWQCSA 1062

  Fly   364 SR------------EDSETTFSS--------------GSEGVD---------------------- 380
            .|            :||:...||              .|...|                      
 Frog  1063 LRSGSDHLPDRDLTKDSKNASSSKLQRGRKRKSKQRATSSSPDKWKEKTPPSERSPMAIRRQTKE 1127

  Fly   381 -------EVSTILTKKIMLRNLDALTNEEAVLTALQLHLKDLSKTVSKVLISRDSLTQASRGICY 438
                   |.:||:.|.|.|.     :..::|:.||:.:|: ||.:..:::.:|.. ........:
 Frog  1128 GKLKAEAESTTIIMKGISLS-----SRPDSVVKALKPYLQ-LSPSNVRIIKNRKH-DHGGGTFGF 1185

  Fly   439 LHFDTLVDSMNVHNALTALDPPLTLDDRVVAITYCIDLEEQQALPKNPKELAVKDSTVNSGNISA 503
            :...:..:::.:...:..|.||||:|.:.|.::..:.......| ||.:                
 Frog  1186 IDLKSHKEAVRLIVLIRELKPPLTVDGKPVTVSLAVGQRRTDPL-KNEQ---------------- 1233

  Fly   504 VSPSGLGGNYTLADVPRLAEYSASLYASNPAEHAYYVQYYTEYYTADINKNNRDSHLTEANSGAA 568
                   |.:..|                                   ||.|.        ||.|
 Frog  1234 -------GKFNKA-----------------------------------NKKNL--------SGQA 1248

  Fly   569 VALSAIQRKQKKMSSIETTITAAATAAAQAAAQVKATLAAQVASAPKGNDGKIYPTPDVTQYQYD 633
                  :|:|::                        .::..||.:...:||        ..|.||
 Frog  1249 ------KRRQRR------------------------AMSHTVADSRADSDG--------PSYIYD 1275

  Fly   634 ETSGYYYDSTTGLYYNAHSQYYYNNETGAYLYWDQRRSTYVLATPASTQAALQEVLADAEQKGEE 698
            ..||.|.|..|..||:..|........|              .||             ..::|:.
 Frog  1276 AESGLYIDPLTNTYYDPTSPRVNPKAEG--------------ETP-------------RREEGQR 1313

  Fly   699 ESKKAKEKEGGNKHDKVKVAKKIVKDMEKWAKQLNQKKDYTAVATPQPILANEVATTSRGNQGGY 763
            |:.:.:|:...:...:....::..:|...|.....:|:              .|..|.|      
 Frog  1314 ETSETREQRRAHGRYRSPSPQRRKRDEYSWRSGSEEKE--------------SVPRTRR------ 1358

  Fly   764 ADVGFSILEKKER-------------GKLNDYAPNPTVGPMNKLVNAYGGTSDSEEDN------- 808
               ||...|.|.|             .|....|..|.|.|:..|:..|||.|:.|:|.       
 Frog  1359 ---GFREEEDKPRVDEPFKKPLPPSIAKKEPPASEPKVNPLIGLIGEYGGDSEEEDDEQLPLLRK 1420

  Fly   809 -------------AASSQNTQSSAVVSGGGGAEESDYVDFHKLTCLLCKRAFQSLEILQKHLKMS 860
                         |..||:..|||..|....:.:....|:.|:.||||:|.|.:.|.|.||.::|
 Frog  1421 KTPPQPPTQPPPPAPVSQSKPSSAPPSTSINSVQEKLTDWTKIACLLCRRQFPNKEALIKHQQLS 1485

  Fly   861 TLHKENLAKLNQNTSSSIEEALAY---RDRAK----ERRLKYGESDPPPPNRSRERFEQEIKTLQ 918
            .|||:||| ::|....| |:.|||   ::|.:    :|||:..:.:.....|..|...|: |:..
 Frog  1486 DLHKQNLA-IHQKIRQS-EKELAYLQQKEREENHSIQRRLQQAKKELEELEREEEGSRQD-KSGH 1547

  Fly   919 SRQKQSTSATPAMPISSSNVGSRLLQKMGWSEGQGLGRKNQGRTQIIEADGRSNYVGLGNKSGQM 983
            .:..:|.........|||.|.:.|..|...|                              |.::
 Frog  1548 HKLNESPPEKKRQKYSSSEVSADLHHKSDKS------------------------------SAKV 1582

  Fly   984 IP-GNDYKSYIKKMMKQRYE 1002
            :| |..|:..::|::..||:
 Frog  1583 VPTGESYRENMRKLILARYK 1602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4887NP_608582.2 U2AF_lg 93..>193 CDD:273727 21/138 (15%)
RRM_SF 255..335 CDD:473069 26/89 (29%)
ZnF_RBZ 341..364 CDD:197784 7/22 (32%)
RanBP2-type Zn finger 342..361 CDD:275377 6/18 (33%)
RRM1_RRM2_RBM5_like 387..473 CDD:409752 17/85 (20%)
OCRE_RBM5_like 623..678 CDD:293881 12/54 (22%)
OCRE repeat 1 628..635 CDD:293881 3/6 (50%)
OCRE repeat 2 636..643 CDD:293881 4/6 (67%)
OCRE repeat 3 644..651 CDD:293881 3/6 (50%)
OCRE repeat 4 652..659 CDD:293881 1/6 (17%)
OCRE repeat 5 661..668 CDD:293881 1/6 (17%)
G-patch 935..979 CDD:396249 6/43 (14%)
LOC100498473XP_002935683.3 COG3899 5..>252 CDD:443106
RRM_SF 957..1034 CDD:473069 24/83 (29%)
RRM_SF 1135..1222 CDD:473069 20/93 (22%)
OCRE_RBM6 1255..1312 CDD:293882 18/91 (20%)
OCRE repeat 1 1261..1268 CDD:293882 1/6 (17%)
OCRE repeat 2 1270..1277 CDD:293882 3/6 (50%)
OCRE repeat 3 1278..1285 CDD:293882 4/6 (67%)
OCRE repeat 4 1286..1293 CDD:293882 3/6 (50%)
OCRE repeat 5 1295..1302 CDD:293882 0/6 (0%)
Blue background indicates that the domain is not in the aligned region.

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