DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4887 and aggf1

DIOPT Version :10

Sequence 1:NP_608582.2 Gene:CG4887 / 33304 FlyBaseID:FBgn0031318 Length:1004 Species:Drosophila melanogaster
Sequence 2:XP_012822835.1 Gene:aggf1 / 100145680 XenbaseID:XB-GENE-6052300 Length:709 Species:Xenopus tropicalis


Alignment Length:718 Identity:142/718 - (19%)
Similarity:243/718 - (33%) Gaps:232/718 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   475 DLEEQQALPKNPKEL----------------AVKDSTVNSGNISAVSPSGLGGNYT--------- 514
            |..|...||..|..|                :.|.|.:..|..||::||   |:.|         
 Frog    14 DPAELSPLPTAPVTLQPDTLQVPSSWESPEGSPKASPLPQGPESALAPS---GDTTAALCLRVRT 75

  Fly   515 -----------LADVPRLAEYSASLYASNPAEHAYYVQYYTEYYTADINKNNR----------DS 558
                       |.|:.|...:|..|:......: ..:|...|..:.::::..|          |.
 Frog    76 LEAELETCRQELRDIQRRLSHSERLHRCTETRN-LELQKQVEQLSRELHERKRAEQTAQEVQTDG 139

  Fly   559 HLTEANS--------------GAAVALSAIQRKQKKMSSIETTITAAATAAAQAAAQVKA-TLAA 608
            :...|.|              |.:..:|..:.........|..:..|..::.|...:|:. |:.|
 Frog   140 YYGWAQSDYCSSGNDYSGFAPGMSEQVSVTEDSNSSQVVAEAVLNKAGASSGQFVEEVQEDTVYA 204

  Fly   609 QVASAPKGND--GKIYPTPD--VTQ--YQYDETSGYYYDSTTGLYYNAHSQYYYNNETGAYLYWD 667
            |.|...:|..  ..:..|.:  |||  :.|||.:|.|||.:||.||::.||.||:..||.|.|.|
 Frog   205 QQAEEEQGCSLADSLRATAEAAVTQTGFVYDENTGMYYDHSTGFYYDSESQLYYDGTTGIYYYCD 269

  Fly   668 QRRSTYVLATPASTQAALQEVLADAEQKGEEESKKAKEKEGGNKHDKVKVAKKIVKDMEKWAKQL 732
            .....|:..:....|:     ..|...:..:: |::|:|    :.|...:.|:..|:.:      
 Frog   270 VDSGRYLYHSRVDLQS-----FTDTNPQPTKD-KRSKKK----RRDPASMEKEEEKEKD------ 318

  Fly   733 NQKKDYTAVATPQPILANEVATTSRGNQGGYADVGFSILEKKERGKLNDYAPNPTVGPMNKLVN- 796
            .:|.::..|:.|:   ..|:|...:..:.|      |::|..||...:.....|..|.:....| 
 Frog   319 TEKMEHEPVSPPE---REELAAERKKARMG------SLVESYERESSSSDESEPEEGEITDSDNE 374

  Fly   797 -------------AYGGTSDSEE-----------------------------DNAAS-------- 811
                         ....||:.|:                             |..|:        
 Frog   375 KTSSDDDRSSGLSVTSHTSEPEDPERIWPPCIRVTVVRSPVLQKGTLFIITADKTATIGREKDLG 439

  Fly   812 -----------------------------SQNTQSSAVVSGGGGAEESD---------------- 831
                                         .|.:|:..|::|....:..:                
 Frog   440 HTIRIPELGISKFHAEVYFDHNLQSYVLVDQGSQNGTVINGNHILQPKEVSQPCVLQHGDEVKFG 504

  Fly   832 --YVDFH----KLTCLLCK----RAFQSLEILQKHLKMSTLHKENLAKLNQNTSSSIEEALAYRD 886
              .:.||    ..||..|:    ||...|...::|.....|.||.             :.|..:.
 Frog   505 ETVLSFHVHPGSETCDGCEPGQVRAHLRLNKKEEHSAGPVLTKEG-------------KELLRKQ 556

  Fly   887 RAKERRLKYG-----------ESDPPPPNRSRERFEQEIKTLQSRQKQSTSATPAMPISSSNVGS 940
            ..|:.|.|||           .::|...:|:..| .|.:.:..:.||:...|:..:.|:.:|.|.
 Frog   557 GLKKIRAKYGLQSADYEDNKVLTNPKYKDRAGRR-RQVVGSDGTFQKEEAPASVHVEINDNNKGR 620

  Fly   941 RLLQKMGWSEGQGLGRKNQGRTQIIEADGRSNYVGLGNKSGQMI----PGNDYKSYIKKMMKQRY 1001
            ::|:||||.:|:|||:.:.|....|:...|....|||.::...|    |....|...:| .::||
 Frog   621 KMLEKMGWKKGEGLGKSSDGIRDPIQLQLRKKKAGLGAQNPTSIEDIQPTTQNKKNWEK-ARERY 684

  Fly  1002 ENA 1004
            ..|
 Frog   685 AEA 687

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4887NP_608582.2 U2AF_lg 93..>193 CDD:273727
RRM_SF 255..335 CDD:473069
ZnF_RBZ 341..364 CDD:197784
RanBP2-type Zn finger 342..361 CDD:275377
RRM1_RRM2_RBM5_like 387..473 CDD:409752
OCRE_RBM5_like 623..678 CDD:293881 25/58 (43%)
OCRE repeat 1 628..635 CDD:293881 4/8 (50%)
OCRE repeat 2 636..643 CDD:293881 4/6 (67%)
OCRE repeat 3 644..651 CDD:293881 4/6 (67%)
OCRE repeat 4 652..659 CDD:293881 4/6 (67%)
OCRE repeat 5 661..668 CDD:293881 3/6 (50%)
G-patch 935..979 CDD:396249 17/43 (40%)
aggf1XP_012822835.1 ATG16 27..>133 CDD:462536 18/109 (17%)
OCRE_VG5Q 225..278 CDD:293883 24/52 (46%)
OCRE repeat 1 230..237 CDD:293883 2/6 (33%)
OCRE repeat 2 238..245 CDD:293883 4/6 (67%)
OCRE repeat 3 246..253 CDD:293883 4/6 (67%)
OCRE repeat 4 254..260 CDD:293883 4/5 (80%)
OCRE repeat 5 263..270 CDD:293883 3/6 (50%)
FHA_AGGF1 402..525 CDD:438738 11/122 (9%)
G-patch 616..658 CDD:396249 16/41 (39%)
Blue background indicates that the domain is not in the aligned region.

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