DRSC/TRiP Functional Genomics Resources

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Protein Alignment Charon and ikb-1

DIOPT Version :10

Sequence 1:NP_608581.2 Gene:Charon / 33303 FlyBaseID:FBgn0031317 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_492575.1 Gene:ikb-1 / 172817 WormBaseID:WBGene00002069 Length:597 Species:Caenorhabditis elegans


Alignment Length:283 Identity:60/283 - (21%)
Similarity:116/283 - (40%) Gaps:54/283 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 VPQVVKRS----------AAEMALKEREEKQLTPVITKRKKRDV-------TQAQNFESYQ---- 208
            :|:.::||          ..|.|........|.|.:.:..|:|:       ..|:|.:|:.    
 Worm   129 LPRKIQRSHTQEISLFDNLLEFATNGDTISLLQPFVAQISKQDIEGNTVFHVAAKNGQSFSLKLL 193

  Fly   209 ITNKTPVRRNSTLSDISFNSDELTRVENFISGNTEDRIIRIMANEFRKSHIMSEEGLLPIHEEIL 273
            ::...|..:|..::  ..|:..||.:...|.....|.:..:| |...|..|....|...:|   .
 Worm   194 LSVIPPDIKNEVIN--VQNTHGLTALHVAIRTGDPDAVHYLM-NHGAKIDISDNHGSTALH---Y 252

  Fly   274 HGDVY--GVKRQIFVCCHA-KMDINELLTRDGEDCLELALTNDTDTEIVSLILDARMMTDHL--Y 333
            .||.|  .:.::|...... :.|:|: |..:|...:.:|:.. ....::.::::|..:.|.|  .
 Worm   253 LGDAYNESIFKEILEPSRGQRFDVNQ-LNSEGFAPIHVAVRR-LKLSLIEMLIEAGALIDFLDTE 315

  Fly   334 ENSNTALHLAVINHINIESIRLLLRRIDLNSLLLTNDDGYTVLHLAVRNNQFLVVEAILDSIDER 398
            :..|..:|...:|  :.|:|:||:.|  .:...:.::.|.|.|.|||:|..:.|:..:||:    
 Worm   316 KKRNALMHAIEMN--DFETIQLLVER--GSGTNIEDESGETALSLAVKNVNYPVIGLLLDN---- 372

  Fly   399 ELGETVYRRTLEAANPNEWDEKG 421
                        .|:||..:.||
 Worm   373 ------------GADPNRQNSKG 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CharonNP_608581.2 ANKYR 290..513 CDD:440430 31/135 (23%)
ANK repeat 301..333 CDD:293786 5/33 (15%)
ANK repeat 335..369 CDD:293786 8/33 (24%)
ANK repeat 371..455 CDD:293786 15/51 (29%)
ANK repeat 457..488 CDD:293786
ikb-1NP_492575.1 ANKYR 167..388 CDD:440430 53/245 (22%)
ANK repeat 173..210 CDD:293786 5/38 (13%)
ANK repeat 212..243 CDD:293786 8/31 (26%)
ANK repeat 282..313 CDD:293786 4/31 (13%)
ANK repeat 315..347 CDD:293786 8/35 (23%)
ANK repeat 349..380 CDD:293786 13/46 (28%)
Death_NFkB-like 515..592 CDD:260024
Blue background indicates that the domain is not in the aligned region.

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