Sequence 1: | NP_001259853.1 | Gene: | mtRNApol / 33285 | FlyBaseID: | FBgn0261938 | Length: | 1369 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_179989.1 | Gene: | SCA3 / 816946 | AraportID: | AT2G24120 | Length: | 993 | Species: | Arabidopsis thaliana |
Alignment Length: | 954 | Identity: | 315/954 - (33%) |
---|---|---|---|
Similarity: | 464/954 - (48%) | Gaps: | 189/954 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 506 LEQLAREQLKIELDGSITIKSIEKSKEFANSEKCRELLKELEDTWRKQISAAIVRDL------NT 564
Fly 565 LRAQVRFKPHGFMNYYTYLK--------------------------TLDASHFADILIKELYKLA 603
Fly 604 -EGSETFSPTVGQLYKELGQKVQQRYQIEQ-----KKHNGTLEKIGEIYSSYCELWGSGMSQDN- 661
Fly 662 -----TRQAWQRLVYEQRESGPSMDLLEV-------PWPSNVLTGVGRFLYNILMRDIKIDAHIM 714
Fly 715 RQKSKSKAAAQPQNLLPAFYTLFRNQGRFVKEEVKPHPVLSRLFRASRQQTLTFDSNL------- 772
Fly 773 --------VPMLCPPQPWSTPHNGGYLLNKTELIRLPHQAIQQWDRIMASNPQHLYPALDSLNQL 829
Fly 830 ASVPWRVNTQLLDVIIKVFQNGGDV-----KLDVPQPPSSLPPLPTLPAKDAEGNATSSEDRAKQ 889
Fly 890 FRDKLGHRRK---QAEMYSLWCDALYRLSLAQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSD 950
Fly 951 LARSMLIFDQAQPLGVDGLSWLKLHCINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRM 1014
Fly 1015 WWSKSDEPWQTLACCMEIANVHRCPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAP 1079
Fly 1080 SAIPQDVYSAVAALVEKSRKADAQNG------LHVAEALAGFVRRKVIKQTVMTTVYGVTRYGAR 1138
Fly 1139 LQIARQLKD---IDDFPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQN- 1199
Fly 1200 -VEWVTPLGLPVVQPYNRQEMKHSPRSGFKVSANMPMDLYERPN---ILKQKNAFPPNFIHSLDS 1260
Fly 1261 SHMMLTSLHCERQGITFVSVHDCFWTHANTVPELNRMCREQFVALHSQPILEQLSEFMRHTYSFK 1325
Fly 1326 DSDFINDGSVEDLSKRQLNRILKQMPQKGDFDLRNVLDSVYFFS 1369 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
mtRNApol | NP_001259853.1 | RPO41 | 286..1369 | CDD:227439 | 314/952 (33%) |
PPR repeat | 314..342 | CDD:276811 | |||
PPR repeat | 355..384 | CDD:276811 | |||
PPR | 358..386 | CDD:279828 | |||
RPOL_N | 513..829 | CDD:291372 | 81/381 (21%) | ||
RNA_pol | 962..1368 | CDD:279308 | 178/420 (42%) | ||
SCA3 | NP_179989.1 | RPO41 | <162..992 | CDD:227439 | 303/921 (33%) |
RNA_pol | 602..992 | CDD:395752 | 178/420 (42%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 1 | 1.000 | 336 | 1.000 | Domainoid score | I251 |
eggNOG | 1 | 0.900 | - | - | E1_COG5108 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H37996 | |
Inparanoid | 1 | 1.050 | 466 | 1.000 | Inparanoid score | I359 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D135329at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0003398 | |
OrthoInspector | 1 | 1.000 | - | - | otm2973 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101824 | |
Panther | 1 | 1.100 | - | - | O | PTHR10102 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X2294 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
14 | 13.830 |