DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Atg4a and Atg4d

DIOPT Version :10

Sequence 1:NP_608563.1 Gene:Atg4a / 33283 FlyBaseID:FBgn0031298 Length:411 Species:Drosophila melanogaster
Sequence 2:NP_001094483.2 Gene:Atg4d / 686505 RGDID:1596392 Length:473 Species:Rattus norvegicus


Alignment Length:457 Identity:134/457 - (29%)
Similarity:202/457 - (44%) Gaps:100/457 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LGPDSVLASAVGQ-AVGSGEPEDIPRRNT-------------------------DVWVLGKKYNA 59
            |||.....:|:|. .....||:::.:..|                         .|.:.|:.|:.
  Rat    39 LGPSGSGVAALGSTGTDPAEPDEVDKFKTKFLTAWNNVKYGWAVKSRTSFSKISSVHLCGRCYHF 103

  Fly    60 IQE--LELIRRDIQSRLWCTYRHGFSPLGEVQLTTDKGWGCMLRCGQMVLAQALIDLHLGRDWFW 122
            ..|  ::..:||..||||.|||..|.||.. .||:|.|||||||.|||:|||.|:...|.|||.|
  Rat   104 EGEGDIQRFQRDFVSRLWLTYRRDFPPLAG-SLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWRW 167

  Fly   123 T---------------------PDCR--------------DATYLKIVNRFEDVRNSFYSIHQIA 152
            .                     |..|              |..:.:||:.|.|...:.:.:|::.
  Rat   168 VEGTGLASSEMPGPASPSRYRGPGRRGPLRCAQGALEMEPDRWHRRIVSWFADHPQAPFGLHRLV 232

  Fly   153 QMGESQNKAVGEWLGPNTVAQILKKLVR-FDDWSSLAIHVAMDSTVVLDDVYASCR---EGGSWK 213
            ::|:|..|..|:|.||:.||.||:|.|. ..:.:.|.::|:.|.||...||.....   ....||
  Rat   233 ELGQSSGKKAGDWYGPSVVAHILRKAVESCSEVTRLVVYVSQDCTVYKADVARLVSWPDPTAEWK 297

  Fly   214 PLLLIIPLRLGITDINPLYVPALKRCLELDSSCGMIGGRPNQALYFLGYVDDEVLYLDPHTTQRT 278
            .:::::|:|||...:||:|||.:|..|..:...|::||:|..:|||:||.||.:||||||..|.|
  Rat   298 SVVILVPVRLGGETLNPVYVPCVKELLRSELCLGIMGGKPRHSLYFIGYQDDFLLYLDPHYCQPT 362

  Fly   279 GAVAQKTAAAEQDYDETYHQKHAARLNFSAMDPSLAVCFLCKTSDSFESLLTKLKEEVLSLCSPA 343
            ..|.|.....     |::|.....::.|:.||||..|.|.......||:|.::|. .:||..|..
  Rat   363 VDVNQANFPL-----ESFHCTSPRKMAFAKMDPSCTVGFYAGNRKEFETLCSELM-RILSSSSVT 421

  Fly   344 ----LFEISQTRAVDWDTTEDIDWPTMPDIDWPAGTSDSDSFAIVEESGRDSDAGCSGAIGSGKK 404
                :|.:::..|.|..........:.|.:..|                      |:|.:...|:
  Rat   422 ERYPMFTVAEGHAQDHSLDALCTQLSQPTLRLP----------------------CTGRLLKAKR 464

  Fly   405 PS 406
            ||
  Rat   465 PS 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg4aNP_608563.1 Peptidase_C54 63..328 CDD:460915 107/303 (35%)
Atg4dNP_001094483.2 Peptidase_C54 109..410 CDD:460915 108/306 (35%)

Return to query results.
Submit another query.