DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg4a and Atg4b

DIOPT Version :9

Sequence 1:NP_608563.1 Gene:Atg4a / 33283 FlyBaseID:FBgn0031298 Length:411 Species:Drosophila melanogaster
Sequence 2:NP_777363.1 Gene:Atg4b / 66615 MGIID:1913865 Length:393 Species:Mus musculus


Alignment Length:347 Identity:157/347 - (45%)
Similarity:210/347 - (60%) Gaps:48/347 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 EPEDIPRRNTDVWVLGKKYNAIQELELIRRDIQSRLWCTYRHGFSPLGEVQLTTDKGWGCMLRCG 103
            |.||.|..:..||:||:||:...|.:.|..|:.||||.|||..|..:|....|:|.|||||||||
Mouse    15 EFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRRNFPAIGGTGPTSDTGWGCMLRCG 79

  Fly   104 QMVLAQALIDLHLGRDWFWT-----PDCRDATYLKIVNRFEDVRNSFYSIHQIAQMGESQNKAVG 163
            ||:.||||:..||||||.||     ||    :|..::|.|.|.::|:||||||||||..:.|::|
Mouse    80 QMIFAQALVCRHLGRDWRWTQRKRQPD----SYFNVLNAFLDRKDSYYSIHQIAQMGVGEGKSIG 140

  Fly   164 EWLGPNTVAQILKKLVRFDDWSSLAIHVAMDSTVVLDDVYASCREG------------------- 209
            :|.|||||||:||||..||.|||||:|:|||:|||::::...||..                   
Mouse   141 QWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRANLPCVGAAALPTDSERHCNG 205

  Fly   210 -----------GSWKPLLLIIPLRLGITDINPLYVPALKRCLELDSSCGMIGGRPNQALYFLGYV 263
                       .:|:||:|:||||||:||||..||..||.|..:..|.|:|||:||.|.||:|||
Mouse   206 FPAGAEVTNRPSAWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYV 270

  Fly   264 DDEVLYLDPHTTQRTGAVAQKTAAAEQDYDETYHQKH-AARLNFSAMDPSLAVCFLCKTSDSFES 327
            .:|::||||||||....:.......    ||::|.:| .:|:....:|||:||.|.|||.:.|..
Mouse   271 GEELIYLDPHTTQPAVELTDSCFIP----DESFHCQHPPSRMGIGELDPSIAVGFFCKTEEDFND 331

  Fly   328 LLTKLKEEVLSLCSPAL--FEI 347
            ...::|:  ||....||  ||:
Mouse   332 WCQQVKK--LSQLGGALPMFEL 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg4aNP_608563.1 Peptidase_C54 66..328 CDD:281417 139/297 (47%)
Atg4bNP_777363.1 Peptidase_C54 40..335 CDD:281417 139/302 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837619
Domainoid 1 1.000 279 1.000 Domainoid score I1680
eggNOG 1 0.900 - - E1_KOG2674
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 304 1.000 Inparanoid score I2629
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55011
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000466
OrthoInspector 1 1.000 - - otm43676
orthoMCL 1 0.900 - - OOG6_100501
Panther 1 1.100 - - LDO PTHR22624
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R109
SonicParanoid 1 1.000 - - X289
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.790

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