DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment IA-2 and Ptpn20

DIOPT Version :10

Sequence 1:NP_608562.4 Gene:IA-2 / 33277 FlyBaseID:FBgn0031294 Length:1319 Species:Drosophila melanogaster
Sequence 2:NP_001073618.1 Gene:Ptpn20 / 306281 RGDID:1309812 Length:421 Species:Rattus norvegicus


Alignment Length:343 Identity:107/343 - (31%)
Similarity:159/343 - (46%) Gaps:40/343 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   907 RITSLSKENEGRPPS-------SRSSTSSWSEEPALTNMD-------ISTGHMVLSYMEDHLRNK 957
            |.:|:..|:.|  ||       |.|||.:...|..||.:.       .|:....|......|:.|
  Rat    93 RWSSVDPESAG--PSKTVSTVLSESSTDTAVSERELTQLAQIRPLIFNSSSRAALRDCLKALQKK 155

  Fly   958 GRLQ--REWEALCRYEAE----PSAREAASQPQCAGLNRPGAPLPYDHSRVVLNHLANAEGLDYV 1016
            ..|.  ||:     .|.|    |...::..:.|....||....||||.:||.|     .:..||:
  Rat   156 EELDIIREF-----LELEEMIPPDDFKSGYELQNRDKNRYRDILPYDSTRVPL-----GKNKDYI 210

  Fly  1017 NAS--TITDHDPRAPAYVAAQGPLPSTLAHFWQMIWEQGAVVIVALCRLQENGEVACARYWPEEG 1079
            |||  .|.:|:... .|:|.|||||.|:..||||:.|....||..:.|..|.|.:.|..|||...
  Rat   211 NASYIRIVNHEEEY-FYIATQGPLPDTIEDFWQMVLENNCNVIAMITREIEGGVIKCCSYWPVSL 274

  Fly  1080 AEVYHIYEVHLVSEHIWCDDY-LVRSFYLKNLRTSETRTVTQFHFLSWPHMGVPAQAKALLDFRR 1143
            .|.......|::.|:.....| ::|.|.:....|.::.:|....|:.||..|.||.|...:.:.|
  Rat   275 KEPLEFKHFHVLLENFQITQYFVIRIFQIVKKSTGKSHSVKHLQFIKWPDHGTPASADFFIKYVR 339

  Fly  1144 KVNKSYRGRRSCPIVVHGSAGAGRTGVYILLDLVLERMNKGAREIDIAATLEHLRDQRAGVVATR 1208
            .|.||:   .:.|::||.|||.|||||:|.:|:|...:.|. ...:|...:..:|.||.|::.|:
  Rat   340 YVRKSH---ITGPLLVHCSAGVGRTGVFICVDVVFCTIEKN-YSFNIMNIVTQMRKQRFGMIQTK 400

  Fly  1209 QQFEFVLMAVAEEVHAIL 1226
            :|::|....|.|.:..:|
  Rat   401 EQYQFCYEIVLEVLQNLL 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IA-2NP_608562.4 Receptor_IA-2 705..795 CDD:463293
PTP_DSP_cys 942..1225 CDD:475123 92/291 (32%)
Ptpn20NP_001073618.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..58
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..116 7/24 (29%)
PTP_DSP_cys 209..415 CDD:475123 72/210 (34%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.