DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmtc2 and kdm6a

DIOPT Version :10

Sequence 1:NP_608558.1 Gene:Tmtc2 / 33276 FlyBaseID:FBgn0028481 Length:938 Species:Drosophila melanogaster
Sequence 2:XP_005167851.1 Gene:kdm6a / 569277 ZFINID:ZDB-GENE-081105-56 Length:1452 Species:Danio rerio


Alignment Length:509 Identity:99/509 - (19%)
Similarity:172/509 - (33%) Gaps:163/509 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   556 CNQRTRNILLLSFSLLLAAMSLRTLRRNADWRDEESLYRSAIAINPPKALG------NLGSVLSS 614
            |..|.:.|     .|.|..|    .:.|.|:......::.|:..:.|..|.      ::..|...
Zfish   179 CFSRAKEI-----HLRLGLM----FKVNTDYESSLKHFQLALIDSTPCTLSKAEIQFHIAHVYEI 234

  Fly   615 QGRYEEAKQVLQEAIRFRPNMADVHF----NLGILHQ---------NQQVYPAAVECFQRAIKFR 666
            |.:|..||:..:..::.....|.|..    .||.:|.         |:..|  |::|.|::::..
Zfish   235 QKKYRIAKEAYESLLQTENLPAQVKATTLQQLGWMHHTVEQLGDKANKNSY--AIQCLQKSLEAD 297

  Fly   667 PNLAVAYLNLGISFIALGKRQQA--------------------IEILQAGSNLDGAAVRDRTAH- 710
            ||...::..||..:.::||.|.|                    |.:|....|....|::   |: 
Zfish   298 PNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQ---AYI 359

  Fly   711 -----DQARSSAYLQLGALYVEQGKLQRALAIY-----REALSSLPGLPQQREILYQRIGDVLGR 765
                 |.:.::|::.||.||....:.|.|:..|     .::.|::|.|..:.:.|..:    |..
Zfish   360 CAVQLDHSHAAAWMDLGTLYESCNQPQDAIKCYINATCSKSCSNIPALTARIKCLQAQ----LCN 420

  Fly   766 LQQ----------------WD-----------------------EAERHHRAALELQPNQVAAHL 791
            |||                |.                       :|.:.:.|..::....:..|:
Zfish   421 LQQGSLPSKSKMLPSIEEAWSLPIPAELTSRQGALNTTQQQTTCKAHQSNEAQSQIPSQSLPPHV 485

  Fly   792 SYGITLARNSSRASEAEMWFKRALKLAPEQASVY-----HHYAEFLSL---------QSRHHESA 842
            ..|.|    ..::|.|:.  ||....|...:..:     ||.....||         |.|::.  
Zfish   486 LSGQT----EDQSSPAKK--KRTTSPARNSSDSWTNDPGHHQISNWSLTPQKLQLLEQLRNNR-- 542

  Fly   843 IYHRRAAELAPNDYTLVVAAATAMRLLDR----KVDAEMWYRKAVALRP-GDAHAHTNLGAI--- 899
                  |.|.|....::......:.|:.:    :::|....|.:|:..| .|:...||..:.   
Zfish   543 ------ANLKPVQLQMLEQLEKQLSLMQQNQQTRLNAMGQIRPSVSNGPVADSSLPTNSNSTPSP 601

  Fly   900 --LHL-LGRTNHAAASYKAALRLQP-------------GDAITLGNLAKLGVTN 937
              .|: |.||..|.....|    ||             ..|.||||...:.|.|
Zfish   602 HHPHIALSRTPSALTRCAA----QPIANGPVPASPVPCSTAGTLGNTDAVSVGN 651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc2NP_608558.1 TMTC_DUF1736 270..343 CDD:462468
TPR 597..852 CDD:440225 65/357 (18%)
TPR repeat 602..630 CDD:276809 7/33 (21%)
TPR repeat 635..665 CDD:276809 10/42 (24%)
TPR repeat 670..694 CDD:276809 7/43 (16%)
TPR repeat 715..743 CDD:276809 8/32 (25%)
TPR repeat 748..782 CDD:276809 9/72 (13%)
TPR 780..>933 CDD:440225 38/190 (20%)
TPR repeat 787..816 CDD:276809 7/28 (25%)
TPR repeat 822..850 CDD:276809 6/41 (15%)
TPR repeat 855..885 CDD:276809 4/33 (12%)
TPR repeat 890..918 CDD:276809 8/33 (24%)
kdm6aXP_005167851.1 Spy 46..>211 CDD:443119 8/40 (20%)
TPR repeat 95..123 CDD:276809
TPR repeat 131..176 CDD:276809
LapB 138..395 CDD:442196 48/229 (21%)
TPR repeat 181..211 CDD:276809 7/38 (18%)
TPR repeat 222..250 CDD:276809 5/27 (19%)
TPR repeat 260..295 CDD:276809 8/36 (22%)
TPR repeat 302..329 CDD:276809 6/26 (23%)
TPR repeat 334..364 CDD:276809 5/32 (16%)
TPR repeat 369..395 CDD:276809 8/25 (32%)
Herpes_BLLF1 <569..915 CDD:282904 22/87 (25%)
JmjC 1149..1213 CDD:214721
JmjC 1183..1291 CDD:396791
Blue background indicates that the domain is not in the aligned region.

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