DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4341 and tmtc2a

DIOPT Version :9

Sequence 1:NP_608558.1 Gene:CG4341 / 33276 FlyBaseID:FBgn0028481 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_001124075.1 Gene:tmtc2a / 564667 ZFINID:ZDB-GENE-041210-299 Length:844 Species:Danio rerio


Alignment Length:933 Identity:366/933 - (39%)
Similarity:498/933 - (53%) Gaps:142/933 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 LFCCSLAFVLYLNTLGAGFVYDDRRAILANADVSGGTPWQRSFSNDFWGTPLTDSGSHGSWRPLC 100
            |.|.::|.:||:|||.|.|.|||.|||..|.|:...|||.....:|||||.||.||||.|:||||
Zfish     5 LVCSAVALLLYMNTLSADFCYDDSRAIKTNQDLLPDTPWTNILYDDFWGTLLTHSGSHKSFRPLC 69

  Fly   101 VLSFRLNYLIGGGFAPWGFHLVNNLLHCVATALVVRVARTLL-ASVWAVLAAGALFAAHPIHTEA 164
            .:||||||.: ||..|:||||.|..|||..|||.....|.|| ...|::| ||.|||:|||||||
Zfish    70 TISFRLNYFL-GGLDPYGFHLFNVGLHCCVTALFTAFCRPLLGGGPWSLL-AGLLFASHPIHTEA 132

  Fly   165 VAGVVGRADLAACVCYLLTYLSY-----LRH-------MRWRESGDPRQWLA--LGATLILAAAG 215
            |||||||||:.|..|:||:.|.|     |||       :.||..    .|||  |||    |||.
Zfish   133 VAGVVGRADVGAAFCFLLSLLCYSQYCRLRHNAAHSSRVAWRAG----SWLAGSLGA----AAAA 189

  Fly   216 LLCKETAITALLVCALFDVMRGLSGQVDKQRLRSVCIVL------GALFCMAY----------CR 264
            ||.||..:|.|.|.|::||.     .|.:.|||...|||      ..|..:|:          .|
Zfish   190 LLWKEQGVTVLAVSAVYDVC-----VVHRLRLRQALIVLLKRKNRSLLVSLAWLVGWGIILLTAR 249

  Fly   265 LVIVPGPQTAFSSADNPIARTPSAWTRLLTFLYLPVFNLRLLLQPNVLSFDWGMDALPRVTSLWD 329
            ...:......||::|||.|.:|...||.|||||||..|..|||.|:.|||||.|||:|.:.|:.|
Zfish   250 FHWMGNKPPNFSNSDNPAADSPHFLTRALTFLYLPSVNAWLLLCPDKLSFDWSMDAVPLLKSIAD 314

  Fly   330 RRNAQSACFYSVLVGVAWGSCRQLLSGSKEVTHCGVSSTFPQYHIQKVASRKSRSKRKRLANNTK 394
            .||.||..|||....:||.|.|.                 |.....|:                 
Zfish   315 WRNLQSVMFYSGFALLAWFSLRN-----------------PPLQATKI----------------- 345

  Fly   395 YQAFEAAYHQQQQEALPCRDCNNNNSSGYVYEGSSPVAQAPAQAPHLVSSAFRGSRSSSSCSNST 459
                                 |.:|...:|                     ..|..:::.||:..
Zfish   346 ---------------------NESNGKSHV---------------------SNGKYATNGCSHKH 368

  Fly   460 NSSSSSSSSSSSSSSSSSSLSGGFQCSSKDYALEGMSPANRHACVLIMSLSFLALPFLPASNLLF 524
            |.:.....:..|:...:.||    :.|.|..      ||..  .|::.||..|.|||:||:||.|
Zfish   369 NDNHYRDLNLKSNGYHNKSL----KVSQKTL------PATE--SVVVFSLGLLVLPFIPATNLFF 421

  Fly   525 YVGFVVAERLLYLPSVGFCLLVGYGVSKL-MSCNQRTRNILLLSFSL-LLAAMSLRTLRRNADWR 587
            |||||||||:||:||:||||||..||..| :.|..::...|||:.:. |:...||:|:|||.||:
Zfish   422 YVGFVVAERVLYIPSMGFCLLVTAGVRSLFVRCRSKSFRALLLTCTAGLVLLYSLKTVRRNQDWK 486

  Fly   588 DEESLYRSAIAINPPKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVY 652
            .||.||||.||:||.||.||||:||.:||:..||::..:.|:.:|.||||:.:|||:|.|..:.:
Zfish   487 SEEMLYRSGIAVNPAKAWGNLGNVLKNQGKMAEAERAYRNALYYRGNMADMLYNLGLLLQENERF 551

  Fly   653 PAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGAAVRDRTAHDQARSSA 717
            ..|:..::.||..||.||.||||:||..::.|..::|.......:::....::|..||..:.:|.
Zfish   552 SEALHYYKLAIGSRPTLASAYLNVGIILVSQGNIEEAKRTFHTCADIPDENLKDPHAHKSSVTSC 616

  Fly   718 YLQLGALYVEQGKLQRALAIYREALSSLPG--LPQQREILYQRIGDVLGRLQQWDEAERHHRAAL 780
            ...||.|..:||:.:.||::|:||:..:|.  .||.   ||..:|:...||...:||...:|.:|
Zfish   617 LYNLGKLLHDQGQHEEALSVYKEAVRKMPRQFAPQS---LYNMMGEAYMRLNILEEAGHWYRESL 678

  Fly   781 ELQPNQVAAHLSYGITLARNSSRASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYH 845
            :.:|:.:.|||:||..|:....: ||||.:|.:|::|.|.:.:.|.||.:||..:||..|:|...
Zfish   679 KAKPDHIPAHLTYGKLLSIMGQK-SEAERYFLKAIELDPARGNCYMHYGQFLLEESRLAEAAAMA 742

  Fly   846 RRAAELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAA 910
            ::||||...::.:|.:||..:|......:||.:|.||..|||....|..||||||||.|:...|.
Zfish   743 QKAAELDNEEFDVVFSAAHMLRQASLNEEAETYYGKAADLRPDHPAALMNLGAILHLNGKLKEAE 807

  Fly   911 ASYKAALRLQPGDAITLGNLAKL 933
            ::|..||:|:|.|.||..||.||
Zfish   808 SNYLRALQLKPDDLITQSNLHKL 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4341NP_608558.1 PMT_2 112..>232 CDD:304453 68/134 (51%)
DUF1736 275..343 CDD:285594 39/67 (58%)
TPR_11 602..667 CDD:290150 26/64 (41%)
TPR_1 602..634 CDD:278916 14/31 (45%)
TPR repeat 602..630 CDD:276809 13/27 (48%)
TPR repeat 635..665 CDD:276809 11/29 (38%)
TPR_11 636..700 CDD:290150 22/63 (35%)
TPR_1 636..668 CDD:278916 11/31 (35%)
TPR repeat 670..694 CDD:276809 9/23 (39%)
TPR_11 714..784 CDD:290150 23/71 (32%)
TPR repeat 715..743 CDD:276809 11/27 (41%)
TPR repeat 748..782 CDD:276809 11/33 (33%)
TPR_11 755..819 CDD:290150 23/63 (37%)
TPR repeat 787..816 CDD:276809 12/28 (43%)
TPR_11 821..887 CDD:290150 23/65 (35%)
TPR repeat 822..850 CDD:276809 10/27 (37%)
TPR repeat 855..885 CDD:276809 9/29 (31%)
TPR_11 <874..921 CDD:290150 23/46 (50%)
TPR repeat 890..918 CDD:276809 13/27 (48%)
tmtc2aNP_001124075.1 DUF1736 254..328 CDD:285594 39/73 (53%)
TPR_11 501..562 CDD:290150 24/60 (40%)
TPR repeat 501..529 CDD:276809 13/27 (48%)
TPR_1 501..>528 CDD:278916 12/26 (46%)
TPR repeat 534..564 CDD:276809 11/29 (38%)
TPR_1 535..>562 CDD:278916 8/26 (31%)
TPR_12 565..642 CDD:290160 26/76 (34%)
TPR repeat 569..597 CDD:276809 9/27 (33%)
TPR repeat 603..642 CDD:276809 14/38 (37%)
TPR_2 617..646 CDD:285020 10/28 (36%)
TPR_11 653..716 CDD:290150 23/63 (37%)
TPR repeat 653..679 CDD:276809 8/25 (32%)
TPR repeat 684..714 CDD:276809 12/30 (40%)
TPR_8 685..716 CDD:289924 13/31 (42%)
TPR_16 757..820 CDD:290168 27/62 (44%)
TPR_1 787..820 CDD:278916 16/32 (50%)
TPR repeat 787..815 CDD:276809 13/27 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 197 1.000 Domainoid score I3060
eggNOG 1 0.900 - - E2759_KOG1124
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H25521
Inparanoid 1 1.050 482 1.000 Inparanoid score I1414
OMA 1 1.010 - - QHG52430
OrthoDB 1 1.010 - - D1320023at2759
OrthoFinder 1 1.000 - - FOG0004694
OrthoInspector 1 1.000 - - mtm6573
orthoMCL 1 0.900 - - OOG6_106232
Panther 1 1.100 - - O PTHR44216
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3302
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.840

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