DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4341 and Ifit3

DIOPT Version :9

Sequence 1:NP_608558.1 Gene:CG4341 / 33276 FlyBaseID:FBgn0028481 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_001007695.1 Gene:Ifit3 / 309526 RGDID:1359681 Length:411 Species:Rattus norvegicus


Alignment Length:251 Identity:51/251 - (20%)
Similarity:93/251 - (37%) Gaps:56/251 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   616 GRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPA---AVECFQRAIKFRPNLAVAYLNLG 677
            ||.|.||...::|:..:|...:....:.|.....|..|.   :|:..::|::.........:.|.
  Rat   150 GRNERAKMCFEKALEEKPEDPECRAGMAIAMYRLQEKPEKQFSVDALKQAMELNSQNQYEKVLLA 214

  Fly   678 ISFIALGKRQQAIEI----LQAGSNLDGAAVRDRTAHDQARSSAYLQLGA-LYVEQGKLQRALAI 737
            :....:|:..:|..:    |:.|.|                .:..||..| .|.::|.|.||:..
  Rat   215 LKLQKMGEEAEAERLVEDALEKGPN----------------QTDVLQKAAQFYRKKGNLDRAIEF 263

  Fly   738 YREALSSLPGLPQQREILYQRIGDVLGRLQQWDEAERHHR----------------AALELQPNQ 786
            ..:||.|.........::..|..:.|.:||...||::..|                .||:.:|:.
  Rat   264 LGKALRSTANNSPLYSLVMCRYREKLKQLQNTGEADKSERRQTMEELRRLTMEYMNKALQRRPSP 328

  Fly   787 VAAHLS----------YGITLARNSSRASEAEMWFKRALKLAPEQASVYHHYAEFL 832
            :.::..          |.:..:..|.||.:.|: |:|...|     ..||..:|.|
  Rat   329 LNSYSDLIDFPEVEKCYQMVFSEESPRAEDQEL-FERYCNL-----QEYHRKSEGL 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4341NP_608558.1 PMT_2 112..>232 CDD:304453
DUF1736 275..343 CDD:285594
TPR_11 602..667 CDD:290150 12/53 (23%)
TPR_1 602..634 CDD:278916 6/17 (35%)
TPR repeat 602..630 CDD:276809 6/13 (46%)
TPR repeat 635..665 CDD:276809 5/32 (16%)
TPR_11 636..700 CDD:290150 11/70 (16%)
TPR_1 636..668 CDD:278916 5/34 (15%)
TPR repeat 670..694 CDD:276809 3/27 (11%)
TPR_11 714..784 CDD:290150 20/86 (23%)
TPR repeat 715..743 CDD:276809 9/28 (32%)
TPR repeat 748..782 CDD:276809 9/49 (18%)
TPR_11 755..819 CDD:290150 18/89 (20%)
TPR repeat 787..816 CDD:276809 7/38 (18%)
TPR_11 821..887 CDD:290150 4/12 (33%)
TPR repeat 822..850 CDD:276809 4/11 (36%)
TPR repeat 855..885 CDD:276809
TPR_11 <874..921 CDD:290150
TPR repeat 890..918 CDD:276809
Ifit3NP_001007695.1 TPR_12 51..126 CDD:290160
TPR repeat 51..79 CDD:276809
TPR repeat 93..123 CDD:276809
TPR_12 94..164 CDD:290160 6/13 (46%)
TPR repeat 136..164 CDD:276809 6/13 (46%)
TPR repeat 206..236 CDD:276809 4/29 (14%)
TPR_19 217..281 CDD:291240 16/79 (20%)
TPR repeat 241..269 CDD:276809 9/27 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1124
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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