DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tmtc2 and Bbs4

DIOPT Version :10

Sequence 1:NP_608558.1 Gene:Tmtc2 / 33276 FlyBaseID:FBgn0028481 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_001100296.1 Gene:Bbs4 / 300754 RGDID:1309134 Length:520 Species:Rattus norvegicus


Alignment Length:425 Identity:90/425 - (21%)
Similarity:153/425 - (36%) Gaps:95/425 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   528 FVVAERLLYLPSVGFCLLVGYGVSKLMSCNQRTRNILLLSFSLLLAAMSLRTLRRNADWRDEESL 592
            |.:.|:|.:|..: :.:...|...|.:...|......|..:::.:.|:..| |..|.    :|||
  Rat    29 FPIVEKLNWLIHL-YYIRKDYEACKAVIKEQLQETQGLCEYAIYVQALIFR-LEGNI----QESL 87

  Fly   593 -YRSAIAINPPKALGNLGSVLSS---QGRYEEAKQVLQEAIRFRPNMADVHFNLGI--------- 644
             .....|:..|:...||..|..|   .|:::.|.:|..||.:......::..|||:         
  Rat    88 ELFQTCAVLSPQCADNLKQVARSLFLLGKHKAATEVYNEAAKLNQKDWEICHNLGVCYTYLKQFS 152

  Fly   645 ------------------------LHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGK 685
                                    :|..|.....|:|.:::|::|.|........||:.::.||.
  Rat   153 KAQDQLHSALQLNKHDLTYIMLGKIHLLQGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGV 217

  Fly   686 RQQAIEILQAGSNLDGAAVRDRTAHDQARSSAYLQLGALYVEQGKLQRALAIYREALSSLPGLPQ 750
            .|:|.|.|       |.|:    .:|.|...|.|..|::....|....||..||....::|..|.
  Rat   218 YQKAFEHL-------GNAL----TYDPANYKAILAAGSMMQTHGDFDVALTKYRVVACAIPESPP 271

  Fly   751 QREILYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARNSSRASEAEMWFKRAL 815
                |:..||...       ..::.:.||:..                            .|||.
  Rat   272 ----LWNNIGMCF-------FGKKKYVAAISC----------------------------LKRAN 297

  Fly   816 KLAPEQASVYHHYAEFLSLQSRHHESAIYHRRAA-ELAPNDYTLVVAAATAMRLLDRKVDAEMWY 879
            .|||....:.::.. .:.|..:.:.||.:...|| ...|....|.:..|.|:..|:...:|:..|
  Rat   298 YLAPFDWKILYNLG-LVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDIENAKRAY 361

  Fly   880 RKAVALRPGDAHAHTNLGAILHLLGRTNHAAASYK 914
            .:||.|...:...:.|...:|:..|....|.|.|:
  Rat   362 VEAVRLDKCNPLVNLNYAVLLYNQGEKKGALAQYQ 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tmtc2NP_608558.1 TMTC_DUF1736 270..343 CDD:462468
TPR 597..852 CDD:440225 59/291 (20%)
TPR repeat 602..630 CDD:276809 10/30 (33%)
TPR repeat 635..665 CDD:276809 8/62 (13%)
TPR repeat 670..694 CDD:276809 7/23 (30%)
TPR repeat 715..743 CDD:276809 8/27 (30%)
TPR repeat 748..782 CDD:276809 6/33 (18%)
TPR 780..>933 CDD:440225 27/136 (20%)
TPR repeat 787..816 CDD:276809 3/28 (11%)
TPR repeat 822..850 CDD:276809 5/28 (18%)
TPR repeat 855..885 CDD:276809 8/29 (28%)
TPR repeat 890..918 CDD:276809 6/25 (24%)
Bbs4NP_001100296.1 TPR repeat 68..95 CDD:276809 7/31 (23%)
LapB 71..332 CDD:442196 66/316 (21%)
TPR repeat 101..129 CDD:276809 9/27 (33%)
TPR repeat 134..164 CDD:276809 3/29 (10%)
TPR repeat 169..196 CDD:276809 5/26 (19%)
TPR repeat 202..229 CDD:276809 9/33 (27%)
TPR repeat 236..264 CDD:276809 8/27 (30%)
Spy 250..>448 CDD:443119 39/187 (21%)
TPR repeat 270..298 CDD:276809 9/66 (14%)
TPR repeat 303..333 CDD:276809 5/30 (17%)
TPR repeat 338..366 CDD:276809 7/27 (26%)
TPR repeat 372..397 CDD:276809 6/25 (24%)
Blue background indicates that the domain is not in the aligned region.

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