DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4341 and tmtc4

DIOPT Version :9

Sequence 1:NP_608558.1 Gene:CG4341 / 33276 FlyBaseID:FBgn0028481 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_001121486.1 Gene:tmtc4 / 100158586 XenbaseID:XB-GENE-5771787 Length:738 Species:Xenopus tropicalis


Alignment Length:875 Identity:245/875 - (28%)
Similarity:366/875 - (41%) Gaps:243/875 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 SLAFVLYLNTLGAGFVYDDRRAILANADVSGGTPWQRSFSNDFWGTPLTDSGSHGSWRPLCVLSF 104
            :||||.:.|:....||:||..||:.|.|:.|.||....:.:|||||.|:.:.||.|:|||.||:|
 Frog    27 TLAFVCFANSYNGRFVFDDSEAIINNKDLRGETPVADLWLHDFWGTKLSSNASHKSYRPLTVLTF 91

  Fly   105 RLNYLIGGGFAPWGFHLVNNLLHCVATALVVRVARTLLASVW-------------AVLAAGALFA 156
            |:||.|.||..|.|||.||.:|||:.:.|::.|...|...:.             |.|.|..|||
 Frog    92 RMNYHIAGGLHPVGFHFVNIVLHCLVSVLMLNVFSMLFGGMTCSHKGKQITYAPKASLLAALLFA 156

  Fly   157 AHPIHTEAVAGVVGRADLAACVCYLLTYLSYLRHMRWRESGDPRQ-WLALGATLILAAAGLLCKE 220
            .||:|||.|||:||||||...:|.:|::|.|.|.:....:..... |:..  :::|||..:||||
 Frog   157 VHPVHTECVAGIVGRADLLCALCVVLSFLGYCRALPGNNTTHSSVFWVMF--SILLAAVAMLCKE 219

  Fly   221 TAITALLVCALFDVM-------------------RGLSGQVDKQRL--RSVCIVLGALFCMAYCR 264
            ..||.|.:.|:|||.                   ...:.:.|::.|  |...:|.|.: ||.|.|
 Frog   220 QGITVLGLNAVFDVFVICKLNILECVQKVLRRDKTSENNKFDRKGLFVRISLLVSGGI-CMLYIR 283

  Fly   265 LVIVPGPQTAFSSADNPIARTPSAWTRLLTFLYLPVFNLRLLLQPNVLSFDWGMDALPRVTSLWD 329
            ..|:.....||:..|||.:...|...|::.:.|....|..|||.|..|.|||.|..:|.:.||.|
 Frog   284 WRIMGTGPPAFTEVDNPASFADSLLVRVINYNYYYSLNGWLLLCPWWLCFDWSMGCIPLINSLSD 348

  Fly   330 RRNAQSACFYSVLVGVAWGSCRQLLSGSKEVTHCGVSSTFPQYHIQKVASRKSRSKRKRLANNTK 394
            .|.......:..|:|:.:                           |.:.|..::.:|        
 Frog   349 WRVIALVALWFCLLGLMY---------------------------QALFSNNAQKRR-------- 378

  Fly   395 YQAFEAAYHQQQQEALPCRDCNNNNSSGYVYEGSSPVAQAPAQAPHLVSSAFRGSRSSSSCSNST 459
                                                                             
 Frog   379 ----------------------------------------------------------------- 378

  Fly   460 NSSSSSSSSSSSSSSSSSSLSGGFQCSSKDYALEGMSPANRHACVLIMSLSFLALPFLPASNLLF 524
                                                        :|.:.|.||.:||||||||.|
 Frog   379 --------------------------------------------MLTLGLGFLIIPFLPASNLFF 399

  Fly   525 YVGFVVAERLLYLPSVGFCLLVGYGVSKLMSCNQRTRNILLLSFSLL-LAAMS-LRTLRRNADWR 587
            .||||||||:|||||||:|:|..||.||:  | :..:|..|||.::| :..|: :|.:.|:..|:
 Frog   400 RVGFVVAERVLYLPSVGYCVLFTYGYSKI--C-RLIKNKKLLSAAILGIMVMNVVRCIYRSNQWK 461

  Fly   588 DEESLYRSAIAINP---------------------------------PK---ALGNLGSVLSSQG 616
            .||.|:||||::.|                                 ||   |:.|||::|..:.
 Frog   462 SEELLFRSAISVCPLNAKVHYNVGKNLADRGYQTEAIEFYRESVRLNPKYVHAMNNLGNILKEKD 526

  Fly   617 RYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFI 681
            :.:||:|:|..|:..:|:.|....||||:..:.:.:..|.:.:..|||:|......|.|||..:.
 Frog   527 QLQEAQQLLSRAVSIQPDFAAAWMNLGIVQNSLKYFEEAEKSYLTAIKYRKKYPDCYYNLGRLYA 591

  Fly   682 ALGKRQQAIEILQAGSNLDGAAVRDRTAHDQARSSAYLQLGALYVEQGKLQRALAIYREALSSLP 746
            .|.:...|:.           |.|:.|......|.|:..:..|....|.|.:|.||.||||..  
 Frog   592 DLNRHVDALN-----------AWRNATFLKPEHSLAWNNMIILMDNTGNLAKAEAIGREALKL-- 643

  Fly   747 GLPQQREILYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARNSSRASEAEMWF 811
             ||....|.:. :.:|||:.|::.|:|.....|:|..|:..:.|.:..: |.........|:..:
 Frog   644 -LPNDHSITFS-LANVLGKAQKYKESESLFLKAIEANPSSASYHNNLAV-LYHRWGNLDLAKKHY 705

  Fly   812 KRALKLAPEQASVYHHYA----EFLSLQSR 837
            :.::||.|.......:|.    :|..||.:
 Frog   706 EISMKLDPSAPGTKENYGLLKRKFEQLQKK 735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4341NP_608558.1 PMT_2 112..>232 CDD:304453 51/133 (38%)
DUF1736 275..343 CDD:285594 22/67 (33%)
TPR_11 602..667 CDD:290150 22/67 (33%)
TPR_1 602..634 CDD:278916 12/34 (35%)
TPR repeat 602..630 CDD:276809 12/30 (40%)
TPR repeat 635..665 CDD:276809 8/29 (28%)
TPR_11 636..700 CDD:290150 16/63 (25%)
TPR_1 636..668 CDD:278916 10/31 (32%)
TPR repeat 670..694 CDD:276809 6/23 (26%)
TPR_11 714..784 CDD:290150 23/69 (33%)
TPR repeat 715..743 CDD:276809 11/27 (41%)
TPR repeat 748..782 CDD:276809 10/33 (30%)
TPR_11 755..819 CDD:290150 14/63 (22%)
TPR repeat 787..816 CDD:276809 3/28 (11%)
TPR_11 821..887 CDD:290150 4/21 (19%)
TPR repeat 822..850 CDD:276809 4/20 (20%)
TPR repeat 855..885 CDD:276809
TPR_11 <874..921 CDD:290150
TPR repeat 890..918 CDD:276809
tmtc4NP_001121486.1 DUF1736 288..362 CDD:369859 23/73 (32%)
TPR 423..708 CDD:223533 81/303 (27%)
TPR repeat 478..506 CDD:276809 0/27 (0%)
TPR repeat 514..540 CDD:276809 10/25 (40%)
TPR repeat 545..575 CDD:276809 8/29 (28%)
TPR repeat 580..606 CDD:276809 8/36 (22%)
TPR repeat 614..642 CDD:276809 11/27 (41%)
TPR repeat 647..677 CDD:276809 8/30 (27%)
TPR repeat 682..710 CDD:276809 3/28 (11%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1320023at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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