DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4341 and tmtc3

DIOPT Version :9

Sequence 1:NP_608558.1 Gene:CG4341 / 33276 FlyBaseID:FBgn0028481 Length:938 Species:Drosophila melanogaster
Sequence 2:XP_001922486.4 Gene:tmtc3 / 100150181 ZFINID:ZDB-GENE-061221-2 Length:932 Species:Danio rerio


Alignment Length:930 Identity:262/930 - (28%)
Similarity:374/930 - (40%) Gaps:259/930 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 CLFCCSLAFVLYLNTLGAGFVYDDRRAILANADVSGGTPWQRSFSNDFWGTPLTDSGSHGSWRPL 99
            ||. ..|....|.|:|..|||:||..|||.|.|:...||.:..|.|||||||:::..||.|:|||
Zfish    10 CLL-TGLVVGCYWNSLFCGFVFDDVSAILDNKDLRPTTPLKNLFLNDFWGTPMSEERSHKSYRPL 73

  Fly   100 CVLSFRLNYLIGGGFAPWGFHLVNNLLHCVATALVVRVARTLLASVWAVLAAGALFAAHPIHTEA 164
            .||:||||||. .......:||:|.:||.|...|.:...|.||....:::|. .|||.|||||||
Zfish    74 TVLTFRLNYLF-SELNSSSYHLLNVVLHAVVCVLFLHFCRLLLDRSTSLIAT-LLFAVHPIHTEA 136

  Fly   165 VAGVVGRADLAACVCYLLTYLSYLRHMRWRESGDPRQ--WLALGATLILAAAGLLCKETAITALL 227
            |.||||||:|.:.:..|..:|:|.     :..|....  |..:.:|:.|.|...||||..||.:.
Zfish   137 VTGVVGRAELLSSIFLLAAFLAYT-----KSKGTDHSIVWTPIISTVFLVAVATLCKEQGITVIG 196

  Fly   228 VCALFD------------------VMRGLSG---QVDKQRLRSVCIVLGALFCMAYCRLVIVPGP 271
            :|.:::                  |:||..|   .|.:..|:.:.:::..|. :...|:.::...
Zfish   197 ICCIYEVFVAQGFTLPMLIDTLLQVLRGKDGFPYAVLQTLLKLIVLIISTLL-LVIIRVQVIQSQ 260

  Fly   272 QTAFSSADNP--IARTPSAWTRLLTFLYLPVFNLRLLLQPNVLSFDWGMDALPRVTSLWDRRNAQ 334
            ...|:..|||  ::.|||   |.|||.||...|..|||.|:.|..||.|..:|.|.||.|.||..
Zfish   261 LPVFTRFDNPAAVSSTPS---RQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLVESLLDSRNLA 322

  Fly   335 SACFYSVLVGVAWGSCRQLLSGSKEVTHCGVSSTFPQYHIQKVASRKSRSKRKRLANNTKYQAFE 399
            :..||:.|                     |:                                  
Zfish   323 TLVFYTFL---------------------GL---------------------------------- 332

  Fly   400 AAYHQQQQEALPCRDCNNNNSSGYVYEGSSPVAQAPAQAPHLVSSAFRGSRSSSSCSNSTNSSSS 464
            .|||                  |..|                                  |.|||
Zfish   333 LAYH------------------GLWY----------------------------------NHSSS 345

  Fly   465 SSSSSSSSSSSSSSLSGGFQCSSKDYALEGMSPANRHACVLIMSLSFLALPFLPASNLLFYVGFV 529
            .                                      :::|:||.:.|||:|||||.|.||||
Zfish   346 K--------------------------------------IIMMALSLIVLPFIPASNLFFPVGFV 372

  Fly   530 VAERLLYLPSVGFCLLVGYGVSKLMSCNQRTRNILLLSFSLLLAAMSLRTLRRNADWRDEESLYR 594
            ||||:||:||:|||:||.||. ||:|.....:.:..|...:||...:::|..||.||..|.:|:.
Zfish   373 VAERVLYVPSMGFCVLVAYGF-KLLSQKGGLKKMSWLLMGILLTTHAVKTFNRNWDWESEYTLFT 436

  Fly   595 SAIAI--NPPKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVE 657
            ||:.:  |..|...|:|..|.:|..||.|.:...:|.|.:|:....|.|:|..::|......|.|
Zfish   437 SALKVNRNNAKLWNNVGHALENQNSYERALRYFLQATRVQPDDIGAHMNVGRTYKNLNRSREAEE 501

  Fly   658 CFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGAAVRDRTAHDQARSSAYLQLG 722
            .:..|....|.:                             :.|.....|.|.:..  :.|:.|.
Zfish   502 AYLIAKSLMPQI-----------------------------IPGKKYATRVAPNHL--NVYINLA 535

  Fly   723 ALY-VEQGKLQRALAIYREALSSLPGLPQQREILYQRIGDVLGRLQQWDEAERHHRAALELQPNQ 786
            .|. ....:|:.|..:||:|:|..|...|    .|...|::|.::.:..||:..:..||||  :.
Zfish   536 NLIRANDSRLEEADQLYRQAISMRPDFKQ----AYISRGELLLKMNKPSEAKDAYLRALEL--DH 594

  Fly   787 VAAHLSYGITLARNSSR-ASEAEMWFKRALKLAPEQASVYHHYAEFLSLQSRHHESAIYHRRA-- 848
            ..|.|.|.:.:.....: .|||...|.|||.|.|.     |..|.|        .||:..:.:  
Zfish   595 TNADLWYNLAIVNIEMKDPSEALRNFNRALDLNPR-----HKLALF--------NSALLMQESGE 646

  Fly   849 AELAPNDYTLVVAAATAMRLLDRKVDAEMWYRKAVALRPGDAHAHTNLGAILHLLGRTNHAAASY 913
            |:|.|                    :|...:...|...|.||:.:.|||.:.........|....
Zfish   647 AKLRP--------------------EANRRFLTYVKEEPDDANGYFNLGMLAMDANENEEAEHWM 691

  Fly   914 KAALRLQPGDAITLGNLAKL 933
            :.|:.||||....|.|||.|
Zfish   692 REAIHLQPGFRSALFNLALL 711

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4341NP_608558.1 PMT_2 112..>232 CDD:304453 44/121 (36%)
DUF1736 275..343 CDD:285594 31/69 (45%)
TPR_11 602..667 CDD:290150 18/64 (28%)
TPR_1 602..634 CDD:278916 10/31 (32%)
TPR repeat 602..630 CDD:276809 9/27 (33%)
TPR repeat 635..665 CDD:276809 7/29 (24%)
TPR_11 636..700 CDD:290150 8/63 (13%)
TPR_1 636..668 CDD:278916 7/31 (23%)
TPR repeat 670..694 CDD:276809 0/23 (0%)
TPR_11 714..784 CDD:290150 20/70 (29%)
TPR repeat 715..743 CDD:276809 8/28 (29%)
TPR repeat 748..782 CDD:276809 8/33 (24%)
TPR_11 755..819 CDD:290150 20/64 (31%)
TPR repeat 787..816 CDD:276809 9/29 (31%)
TPR_11 821..887 CDD:290150 10/67 (15%)
TPR repeat 822..850 CDD:276809 5/29 (17%)
TPR repeat 855..885 CDD:276809 2/29 (7%)
TPR_11 <874..921 CDD:290150 11/46 (24%)
TPR repeat 890..918 CDD:276809 6/27 (22%)
tmtc3XP_001922486.4 DUF1736 258..331 CDD:285594 32/96 (33%)
TPR_11 <434..477 CDD:290150 14/42 (33%)
TPR repeat 445..475 CDD:276809 9/29 (31%)
TPR_1 446..479 CDD:278916 11/32 (34%)
TPR 462..757 CDD:223533 76/320 (24%)
TPR repeat 480..506 CDD:276809 6/25 (24%)
TPR repeat 530..557 CDD:276809 8/26 (31%)
TPR repeat 562..592 CDD:276809 8/33 (24%)
TPR_1 564..596 CDD:278916 10/37 (27%)
TPR_1 597..630 CDD:278916 12/37 (32%)
TPR repeat 597..625 CDD:276809 9/27 (33%)
TPR repeat 667..697 CDD:276809 7/29 (24%)
TPR repeat 702..730 CDD:276809 5/10 (50%)
TPR repeat 736..765 CDD:276809
TPR_11 739..802 CDD:290150
TPR repeat 771..794 CDD:276809
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1124
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1320023at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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