DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and GLR3.4

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_001030971.1 Gene:GLR3.4 / 839268 AraportID:AT1G05200 Length:959 Species:Arabidopsis thaliana


Alignment Length:1059 Identity:216/1059 - (20%)
Similarity:382/1059 - (36%) Gaps:298/1059 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 RSRGQQINIGAFFYDDELELEKEFMTVVNAINGPESEQTMRFYPLIKRLKPEDGSVTMQEHAC-- 81
            |.|...:|:||.|..|..........|..|::...::|:     ::|.:|.   ::..|:..|  
plant    55 RQRPSSVNVGALFTYDSFIGRAAKPAVKAAMDDVNADQS-----VLKGIKL---NIIFQDSNCSG 111

  Fly    82 --------DLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGIQAEKPNH--QMTLN 136
                    .|::|.|.|..||.|...:.:::.|.|...:|.:.|..:|..:.:.:..:  :.|.|
plant   112 FIGTMGALQLMENKVVAAIGPQSSGIAHMISYVANELHVPLLSFGATDPTLSSLQFPYFLRTTQN 176

  Fly   137 LYPAQAILSKAYADIVQNFGWRKFTIVYDADDA--RAAARLQDLLQLREVHNDVVRVRKFHKDDD 199
            .|    ....|.||.:...|||:...::..|:.  ...:.|.|:|..:.                
plant   177 DY----FQMHAIADFLSYSGWRQVIAIFVDDECGRNGISVLGDVLAKKR---------------- 221

  Fly   200 FRVMWK----------SIRG--------ERRV-VLDCEPNMLVELLNSSTEFGLTGQ-YNHIFLT 244
            .|:.:|          |||.        |.|| |:...|:..:.:.:.:...|:... |..|...
plant   222 SRISYKAAITPGADSSSIRDLLVSVNLMESRVFVVHVNPDSGLNVFSVAKSLGMMASGYVWIATD 286

  Fly   245 NLETYTDHLEELAADNETFAVNITAAR------------------LLVNPDPPPYSLPYGY---- 287
            .|.|..|.:|.:.:|.......:.|.|                  |..|.....|:: |.|    
plant   287 WLPTAMDSMEHVDSDTMDLLQGVVAFRHYTIESSVKRQFMARWKNLRPNDGFNSYAM-YAYDSVW 350

  Fly   288 ---------VTQRDNIVYESSDPPRTLIHDLIHDALQLFAQSWRNASFFYPDRMVVPRITCDFAA 343
                     ..:.:||.: |:||.   :|......:||.|.|..|..                  
plant   351 LVARALDVFFRENNNITF-SNDPN---LHKTNGSTIQLSALSVFNEG------------------ 393

  Fly   344 SGGRTWAMGRYLARLMKGTSGVNNTNFRTSILQFDEDGQRITFNIEVYDPLDGIG---IAIWDPR 405
                        .:.||...|:|:|.. |..:|||.|..|:....||.: |:|..   :..|...
plant   394 ------------EKFMKIILGMNHTGV-TGPIQFDSDRNRVNPAYEVLN-LEGTAPRTVGYWSNH 444

  Fly   406 GQITQLNVDV------------KAQKKMIY----------------RVATRIGPP----YFSYNE 438
            ..::.::.:.            :..|.:||                ....|||.|    |..|  
plant   445 SGLSVVHPETLYSRPPNTSTANQRLKGIIYPGEVTKPPRGWVFPNNGKPLRIGVPNRVSYTDY-- 507

  Fly   439 TARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGIIGEIINNDAH 503
            .:::.|..|   .:||.:|:.:|....:.:.   ||.....||. .|....::.::.|::.::..
plant   508 VSKDKNPPG---VRGYCIDVFEAAIELLPYP---VPRTYILYGD-GKRNPSYDNLVNEVVADNFD 565

  Fly   504 MGICDLTITQARKTAVDFTVPFMQLGVSIL-----AYKSPHVEKTLDAYLAPFGGEVW------- 556
            :.:.|:||...|...||||.||::.|:.::     |..||.      ::|.||..|:|       
plant   566 VAVGDITIVTNRTRYVDFTQPFIESGLVVVAPVKEAKSSPW------SFLKPFTIEMWAVTGGFF 624

  Fly   557 ------IWILISVFVMTFLKTIVARISKMDWENPHPCNRDP---EVLENQWRIHNTGWL-----T 607
                  :|||...|...|                    |.|   :::...|...:|.:.     |
plant   625 LFVGAMVWILEHRFNQEF--------------------RGPPRRQLITIFWFSFSTMFFSHRENT 669

  Fly   608 VASIMTAGCDILPRSPQVRMFEATWWIFAIIIAN-SYTANLAAFLTSSKMEGSIANLKDLSAQKK 671
            |:|:              ..|....|:|.::|.| ||||:|.:.||..::...|..:..|....:
plant   670 VSSL--------------GRFVLIIWLFVVLIINSSYTASLTSILTIRQLTSRIEGIDSLVTSNE 720

  Fly   672 ---VKFGTI---YGGSTYNLLAD-----SNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRG 725
               |:.||.   |..:..|:|..     .:|..|..|.....|....|...|.|..::.:..|  
plant   721 PIGVQDGTFARNYLINELNILPSRIVPLKDEEQYLSALQRGPNAGGVAAIVDELPYIEVLLTN-- 783

  Fly   726 DYMFLMETTTLEYHREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQ 790
                            .||..|:||::|....:..|....:....::|.|||:|||.|||..:.:
plant   784 ----------------SNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLSEEGELEKIHR 832

  Fly   791 KWWKNPNASCFEEPDPDATPDMTFEELRGIFYTLYAGILIAFLIGITEFL---VYVQQVALE-ER 851
            | |.|....|..:........::.:...|:|          .:.|||.|:   |:..:|..: :|
plant   833 K-WLNYKHECSMQISNSEDSQLSLKSFWGLF----------LICGITCFMALTVFFWRVFWQYQR 886

  Fly   852 LTFKDAFKKEIRFVLCVWNNRKPIVAGTPISSVRTTPRRSLDKSLDRTPKSSRRVVIGRSSEEMR 916
            |..:.|.::....|      .:|..:|   ...|....:.|.|.:|:.....:.::..:||::::
plant   887 LLPESADEERAGEV------SEPSRSG---RGSRAPSFKELIKVVDKREAEIKEILKQKSSKKLK 942

  Fly   917 EMAQGSGSSSGSNNAGRGE 935
                .:.|::|::.:..||
plant   943 ----STQSAAGTSQSQHGE 957

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 89/445 (20%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 16/96 (17%)
PBP2_iGluR_Kainate 423..794 CDD:270432 96/428 (22%)
Lig_chan 554..828 CDD:278489 65/306 (21%)
GLR3.4NP_001030971.1 PBP1_GABAb_receptor_plant 62..450 CDD:380645 89/452 (20%)
Periplasmic_Binding_Protein_Type_2 <518..591 CDD:389745 20/76 (26%)
Lig_chan 615..869 CDD:365843 67/316 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

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