DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and GLR2.1

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_198062.2 Gene:GLR2.1 / 832768 AraportID:AT5G27100 Length:901 Species:Arabidopsis thaliana


Alignment Length:897 Identity:190/897 - (21%)
Similarity:344/897 - (38%) Gaps:184/897 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 FYDDELELEKEFMTVVNAINGPESEQTMRFYPLIKRLKPEDGSVTMQEHACDLIDN-GVAAIFGP 94
            ||....|.:...:|.|                    :..::..||....|.|||.| .|.||.||
plant    59 FYSSHPETQTRLVTTV--------------------VDSKNDVVTAAAAALDLITNKEVKAILGP 103

  Fly    95 SSKAASDIVALVCNSTGIPHIEFDISDEGIQAEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRK 159
            .:...:..:..:...:.:|.:.:..:...:.:.:..:........:..:  .|..:|::.||||:
plant   104 WTSMQAQFMIEMGQKSQVPIVTYSATSPSLASIRSQYFFRATYDDSSQV--HAIKEIIKLFGWRE 166

  Fly   160 FTIVYDADDARAAA---RLQDLLQ---LREVHNDVVRVRKFHKDDDFRV-MWKSIRGERRVVLDC 217
            ...|| .||.....   ||.|:||   :|..:..|:....  .||:..| :.:.:....||.:  
plant   167 VAPVY-VDDTFGEGIMPRLTDVLQEINVRIPYRTVISPNA--TDDEISVELLRMMTLPTRVFV-- 226

  Fly   218 EPNMLVELLNS-----STEFGLTGQYNHIFLTNLETYTDHLEELAADNETFAVNITAARLLVNPD 277
              ..|||||.|     :||.||..|.....|||  |.||.|..:   ||| .:......|.|.. 
plant   227 --VHLVELLASRFFAKATEIGLMKQGYVWILTN--TITDVLSIM---NET-EIETMQGVLGVKT- 282

  Fly   278 PPPYSLPYGYVTQRDNIV-YESSDPPRTLIHDL------IHD-----ALQLFAQSWRNASFFYPD 330
                     ||.:...:. :.|....|..|.||      .:|     ||.:......|.:|.   
plant   283 ---------YVPRSKELENFRSRWTKRFPISDLNVYGLWAYDATTALALAIEEAGTSNLTFV--- 335

  Fly   331 RMVVPRITCDFAASGGRTWAMGRYLARLMKGTSGVN-----------NTNFRTSILQF----DED 380
            :|...|...:....|     :.:|..:|::..|.|.           |...:.|:.:.    .:.
plant   336 KMDAKRNVSELQGLG-----VSQYGPKLLQTLSRVRFQGLAGDFQFINGELQPSVFEIVNVNGQG 395

  Fly   381 GQRITFNIEVY--------DPLDGIGIAIWDPR-------GQITQL--NVDVKAQKKMIYRVATR 428
            |:.|.|.::.|        .|......:.|..|       |..|.:  ..::....|.:     :
plant   396 GRTIGFWMKEYGLFKN
VDQKPASKTTFSSWQDRLRPIIWPGDTTSVPKGWEIPTNGKRL-----Q 455

  Fly   429 IGPPYFSYNETAREL------NLTGNALYQGYAVDLIDAIARHVGFE--YVFVPVADQQYGKLDK 485
            ||.|   .|.|.::.      .:|.:.::.|:::|..:|:.:.:.::  |.|:|..|..|     
plant   456 IGVP---VNNTFQQFVKATRDPITNSTIFSGFSIDYFEAVIQAIPYDISYDFIPFQDGGY----- 512

  Fly   486 ETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKTLDAYLAP 550
                 :.::.::........:.|.||:..|...|||::|:...||.::......|.::...:|.|
plant   513 -----DALVYQVYLGKYDAVVADTTISSNRSMYVDFSLPYTPSGVGLVVPVKDSVRRSSTIFLMP 572

  Fly   551 FGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLENQWRIHNTGWLTVASIMTAG 615
            ....:|:..|:|.|::..:..::......|::.|           .|:::....|.:.:.::.| 
plant   573 LTLALWLISLLSFFIIGLVVWVLEHRVNPDFDGP-----------GQYQLSTIFWFSFSIMVFA- 625

  Fly   616 CDILPR----SPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVKFGT 676
                ||    |...|:....|:...:::..||||:||:.||:..:..::.|:..|.|:     |.
plant   626 ----PRERVLSFWARVVVIIWYFLVLVLTQSYTASLASLLTTQHLHPTVTNINSLLAK-----GE 681

  Fly   677 IYGGSTYNLLADSNETVYRLAFNLMNNDDP----SAYTKDNLEGVDRVRKNRGDYMFLMETTTLE 737
            ..|..:..:|....::.:..| :|::...|    :..:|...||        |....|||...:.
plant   682 SVGYQSSFILGRLRDSGFSEA-SLVSYGSPEHCDALLSKGQAEG--------GVSAVLMEVPYVR 737

  Fly   738 YHREQNCD-LRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKNPNASCF 801
            ....|.|: .:.|...|.........|.|:...:::|.||||:.|..:...|:..|:|..:.|| 
plant   738 IFLGQYCNKYKMVQTPFKVDGLGFVFPIGSPLVADISRAILKVEESNKANQLENAWFKPIDESC- 801

  Fly   802 EEPD----PDATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVALE 849
              ||    ||..|.::|.:|.  |.:.:...|:|.::.....|.:|.|...|
plant   802 --PDPLTNPDPNPSVSFRQLG--FDSFWVLFLVAAIVCTMALLKFVYQFLKE 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 90/420 (21%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 17/95 (18%)
PBP2_iGluR_Kainate 423..794 CDD:270432 79/387 (20%)
Lig_chan 554..828 CDD:278489 63/286 (22%)
GLR2.1NP_198062.2 PBP1_GABAb_receptor 49..411 CDD:107361 88/404 (22%)
ANF_receptor 49..392 CDD:279440 84/385 (22%)
GluR_Plant 452..794 CDD:270404 79/389 (20%)
Periplasmic_Binding_Protein_Type_2 478..>685 CDD:304360 47/237 (20%)
Lig_chan 576..835 CDD:278489 65/293 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I1813
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.070

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