DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and GLR3.6

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_001326369.1 Gene:GLR3.6 / 824311 AraportID:AT3G51480 Length:903 Species:Arabidopsis thaliana


Alignment Length:894 Identity:189/894 - (21%)
Similarity:330/894 - (36%) Gaps:203/894 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WQRILLLGC----MWSAFFMCRSRGQQINIGAFFYDDEL--ELEKEFMTV----VNAINGPESEQ 56
            |..::|:.|    :.....:..:|.|.:|||:.|..:.|  ::.|..|..    |||.....:..
plant     3 WFLLMLIICNAVPLQGLTKIVSARPQVVNIGSVFTFNSLIGKVIKVAMDAAVEDVNASPSILNTT 67

  Fly    57 TMRFYPLIKRLKPEDGSVTMQEHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISD 121
            |:|   :|......:|.:::.| ....:::...||.||.....:.:||.|.....||.:.|..:|
plant    68 TLR---IIMHDTKYNGFMSIME-PLQFMESETVAIIGPQRSTTARVVAHVATELKIPILSFSATD 128

  Fly   122 EGIQ----------AEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKFTIVYDADD--ARAAAR 174
            ..:.          ::....||.            |.|||||.:|||:...:|..||  ....|.
plant   129 PTMSPLQFPFFIRTSQNDLFQMA------------AIADIVQFYGWREVVAIYGDDDYGRNGVAA 181

  Fly   175 LQDLLQLREVHNDVVRVRKFHK---------DDDFRVMWKSIRGERRVVLDCEPNML--VELLNS 228
            |.|.|..:       |.|..:|         ::...::.|....|.|::: ...:.:  :||.|.
plant   182 LGDRLSEK-------RCRISYKAALPPAPTRENITDLLIKVALSESRIIV-VHASFIWGLELFNV 238

  Fly   229 STEFGL--TGQYNHIFLTNLETYTDHLEELAADNETFAVNITAARLLVNPDPPPYSLPYGYVTQR 291
            :...|:  || |..|....|.|                        :::.|.|   ||...:...
plant   239 ARNLGMMSTG-YVWIATNWLST------------------------IIDTDSP---LPLDTINNI 275

  Fly   292 DNIVYESSDPPRTLIHDLIHDALQLFAQSWRN---------ASFFYPDRMVVPRITCDFAASGGR 347
            ..::......|.:::.       |.|.|.|.|         |.:.|....::.:...||...||.
plant   276 QGVITLRLHTPNSIMK-------QNFVQRWHNLTHVGLSTYALYAYDTVWLLAQAIDDFFKKGGN 333

  Fly   348 -TWAMGRYLARLMKGTSGVNNTN-------FRTSILQFDEDG--QRITFNIE------VYDPLDG 396
             :::....::.|..|...::...       |..||||.|..|  .|:.|..:      .:|.|:.
plant   334 VSFSKNPIISELGGGNLHLDALKVFDGGKIFLESILQVDRIGLTGRMKFTSDRNLVNPAFDVLNV 398

  Fly   397 IG-----IAIWDPRGQITQL------NVDVKAQKKMIYRVA--------------------TRIG 430
            ||     |..|.....::.:      |.....||  ::.|.                    .|||
plant   399 IGTGYTTIGYWFNHSGLSVMPADEMENTSFSGQK--LHSVVWPGHSIKIPRGWVFSNNGRHLRIG 461

  Fly   431 -PPYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGII 494
             |..:.:.|.   :::..|.:..|:.||:..|....:.:...|..||   :|  :......|..:
plant   462 VPNRYRFEEV---VSVKSNGMITGFCVDVFIAAINLLPYAVPFELVA---FG--NGHDNPSNSEL 518

  Fly   495 GEIINNDAH-MGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEK---TLDAYLAPFGGEV 555
            ..:|....: .|:.|:||...|....|||.|:::.|:.::|    .|.|   :..|:|.||..::
plant   519 VRLITTGVYDAGVGDITIITERTKMADFTQPYVESGLVVVA----PVRKLGSSAMAFLRPFTPQM 579

  Fly   556 WIWILISVFVMTFLKTIVARISKMDWENPHPCN---RDP---EVLENQWRIHNTGWLTVASIMTA 614
            |:....|..:          :..:.|...|..|   |.|   :|:...|...:|.:.:.....|:
plant   580 WLIAAASFLI----------VGAVIWCLEHKHNDEFRGPPRRQVITTFWFSFSTLFFSHRETTTS 634

  Fly   615 GCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVKFGTIYG 679
            ...        |:....|....:||.:||||:|.:.||..::...|..::.|..... ..|...|
plant   635 NLG--------RIVLIIWLFVVLIINSSYTASLTSILTVHQLSSPIKGIETLQTNHD-PIGYPQG 690

  Fly   680 GSTYN-LLADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTTLEYHREQN 743
            ....: |:.:.|..|.|    |:....|..|.|...:|..:    .|....:.|...:|......
plant   691 SFVRDYLIHELNIHVSR----LVPLRSPEEYDKALRDGPGK----GGVAAVVDERAYIELFLSNR 747

  Fly   744 CDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKW 792
            |:...||::|.:..:..|.|..:....::|.|||:|||.|::..::.||
plant   748 CEFGIVGQEFTKNGWGFAFPRNSPLAVDVSAAILQLSENGDMQRIRDKW 796

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 93/438 (21%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 17/93 (18%)
PBP2_iGluR_Kainate 423..794 CDD:270432 88/402 (22%)
Lig_chan 554..828 CDD:278489 54/246 (22%)
GLR3.6NP_001326369.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

Return to query results.
Submit another query.