DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and GLR1.1

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_187061.1 Gene:GLR1.1 / 819566 AraportID:AT3G04110 Length:808 Species:Arabidopsis thaliana


Alignment Length:863 Identity:177/863 - (20%)
Similarity:295/863 - (34%) Gaps:261/863 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 ACDLIDNGVA-AIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGIQAEKPNHQMTLNLYPAQAI 143
            |.||:.|..| ||.|..|...:.::|.:.....:|.|...:         ||   ||:|......
plant    86 ATDLLKNAKAEAIVGAQSLQEAKLLATISEKAKVPVISTFL---------PN---TLSLKKYDNF 138

  Fly   144 L---------SKAYADIVQNFGWRKFTIVY-DADD-ARAAARLQDLLQLREVHNDVVRVRKF--- 194
            :         :|....::|:|..:...::| |||| :.:...|.:..|.:.::  :.|...|   
plant   139 IQWTHDTTSEAKGITSLIQDFSCKSVVVIYEDADDWSESLQILVENFQDKGIY--IARSASFAVS 201

  Fly   195 -----HKDDDFRVMWKSIRGERRVVLDCEPNMLVELLNSSTE-FGLTGQ-YNHIFLTNLETYTDH 252
                 |..:..|.: |..|....||...|  :||..|....| .||..: :..|.......|.:|
plant   202 SSGENHMMNQLRKL-KVSRASVFVVHMSE--ILVSRLFQCVEKLGLMEEAFAWILTARTMNYLEH 263

  Fly   253 LEELAADNETFAVNITAARLLVNPDPPPYSLPYGYVTQR------DNIVYESSDPPRTLIHDLIH 311
                      ||:..:...::......|.|......|.|      |:...|.|.   .:|....|
plant   264 ----------FAITRSMQGVIGFKSYIPVSEEVKNFTSRLRKRMGDDTETEHSS---VIIGLRAH 315

  Fly   312 DALQLFAQSWRNASFFYPDRMVVPRITCDFAASGGRTWAMGRYLARLM--------KGTSG---V 365
            |...:.|.:...                 |:.| |:..|.....|.|:        ||.||   :
plant   316 DIACILANAVEK-----------------FSVS-GKVEASSNVSADLLDTIRHSRFKGLSGDIQI 362

  Fly   366 NNTNFRT---SILQFDEDGQRITFNIEVYDPLDGIGIAIWD-------------------PR--- 405
            ::..|.:   .|:....:.||              .|.:|.                   ||   
plant   363 SDNKFISETFEIVNIGREKQR--------------RIGLWSGGSFSQRRQIVWPGRSRKIPRHRV 413

  Fly   406 ----GQITQLNVDVKAQKKMIYRVATRIGPPYFSYNETARELNLTGNALYQGYAVDLIDAIARHV 466
                |:...|.|.|.|..|:.:.|:.|..|.             ||.....|:.|::........
plant   414 LAEKGEKKVLRVLVTAGNKVPHLVSVRPDPE-------------TGVNTVSGFCVEVFKTCIAPF 465

  Fly   467 GFEYVFVPVA---DQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQL 528
            .:|..|:|..   |.....|..:..:::..:|            |:|||..|...||||:|:..:
plant   466 NYELEFIPYRGNNDNLAYLLSTQRDKYDAAVG------------DITITSNRSLYVDFTLPYTDI 518

  Fly   529 GVSILAYKSPHVEKTLDAYLAPFGGEVWI-----WILISVFVMTFLKTIVARISKMDWENPHPCN 588
            |:.||..|..  .:.:..:..||...:|:     ::|..:.|....:::                
plant   519 GIGILTVKKK--SQGMWTFFDPFEKSLWLASGAFFVLTGIVVWLVERSV---------------- 565

  Fly   589 RDPEVLENQW--RIHNTGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFL 651
             :|| .:..|  ::....|...::|:.|..:.|.:... |.....|....:|:.:||:|||.:..
plant   566 -NPE-FQGSWGQQLSMMLWFGFSTIVFAHREKLQKMSS-RFLVIVWVFVVLILTSSYSANLTSTK 627

  Fly   652 TSSKME--------GSIANLKDLSAQKKVKFGTIYGGSTY-NLLADS------NETVYRLAFNLM 701
            |.|:|:        ||..::       ..|.|:|.....| .||.|.      ||..|   .:::
plant   628 TISRMQLNHQMVFGGSTTSM-------TAKLGSINAVEAYAQLLRDGTLNHVINEIPY---LSIL 682

  Fly   702 NNDDPSAYTKDNLEGVDRVRKNRG-DYMFLMETTTLEYHREQNCDLRSVGEKFGEKHYAIAVPFG 765
            ..:.|:.:..     .|||....| .:||           ::..||               ||  
plant   683 IGNYPNDFVM-----TDRVTNTNGFGFMF-----------QKGSDL---------------VP-- 714

  Fly   766 AEYRSNLSVAILKLSERGELYDLKQKWWK---------NPNASCFEEPDPDATPDMTFEELRGIF 821
                 .:|..|.||...|.|.|:::||::         |.........|.:|:...||.||||:|
plant   715 -----KVSREIAKLRSLGMLKDMEKKWFQKLDSLNVHSNTEEVASTNDDDEASKRFTFRELRGLF 774

  Fly   822 YTLYAGILIAFLIGITEF 839
              :.||.....::.:..|
plant   775 --IIAGAAHVLVLALHLF 790

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 74/384 (19%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 19/97 (20%)
PBP2_iGluR_Kainate 423..794 CDD:270432 82/396 (21%)
Lig_chan 554..828 CDD:278489 64/305 (21%)
GLR1.1NP_187061.1 PBP1_GABAb_receptor 31..397 CDD:107361 74/372 (20%)
ANF_receptor 45..377 CDD:279440 70/338 (21%)
Periplasmic_Binding_Protein_Type_2 421..737 CDD:304360 86/409 (21%)
Lig_chan 542..781 CDD:278489 65/307 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I1813
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.070

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