DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and GLR2.2

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_180048.1 Gene:GLR2.2 / 817008 AraportID:AT2G24720 Length:920 Species:Arabidopsis thaliana


Alignment Length:984 Identity:203/984 - (20%)
Similarity:353/984 - (35%) Gaps:308/984 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 FFMC--RSRGQ-----QINIG---------------------AFFYDDELELEKEFMT--VVNAI 49
            ||.|  .||||     |:|||                     |.||..    ..:|.|  |||. 
plant    15 FFFCLESSRGQDNGKTQVNIGVVSDVGTSYPDVAMLCINMSLADFYSS----RPQFQTRLVVNV- 74

  Fly    50 NGPESEQTMRFYPLIKRLKPEDGSVTMQEHACDLIDN-GVAAIFGPSSKAASDIVALVCNSTGIP 113
             |......:             |:.|.   |.|||.| .|.||.||.:...:..:..:...:.:|
plant    75 -GDSKNDVV-------------GAATA---AIDLIKNKQVKAILGPWTSMQAHFLIEIGQKSRVP 122

  Fly   114 HIEFDISDEGIQAEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKFTIVYDADDARAAA---RL 175
            .:.:..:...:.:.:..:........:..:  .|...|::.||||:...|| .|:.....   ||
plant   123 VVSYSATSPSLTSLRSPYFFRATYEDSSQV--HAIKAIIKLFGWREVVPVY-IDNTFGEGIMPRL 184

  Fly   176 QDLLQLREVHNDVVRVRKFHKDDDFRVMWKSIRGERRVVLDC-EPNMLVELLNSSTEFGLTGQYN 239
            .|.||                |.:.|:.::|:     :.|:. :.::.||||.      :.....
plant   185 TDSLQ----------------DINVRIPYRSV-----IPLNATDQDISVELLK------MMNMPT 222

  Fly   240 HIFLTNLETYTDHLEELAADNETFAVNITAARL-LVNPDPPPYSLPYGYVTQRDNIVYESSDPPR 303
            .:|:.::.:      .||:     .|.|.|..| |:.|         |||....|.|   .|..|
plant   223 RVFIVHMSS------SLAS-----TVFIKAKELGLMKP---------GYVWILTNGV---MDGLR 264

  Fly   304 TL-------------IHDLIHDA--LQLFAQSWRNASFFYPDRMVVPRITCDFAASGGRTWAMGR 353
            ::             |...|..:  |:.|...|:..         .|::..:...    .||...
plant   265 SINETGIEAMEGVLGIKTYIPKSKDLETFRSRWKRR---------FPQMELNVYG----LWAYDA 316

  Fly   354 YLARLMK-GTSGVNNTNFRTSILQFDEDGQRITFNIEVYDPLDGIGIAIWDPR------------ 405
            ..|..|. ..:|:||..|...     :.|:.::       .|||:|::.:.|:            
plant   317 TTALAMAIEDAGINNMTFSNV-----DTGKNVS-------ELDGLGLSQFGPKLLQTVSTVQFKG 369

  Fly   406 ---------GQI---------------------TQLNVDVK---AQKKMIYRVAT---------- 427
                     ||:                     |:.|..||   .:.:.|..::|          
plant   370 LAGDFHFVSGQLQPSVFEIVNMIGTGERSIGFWTEGNGLVKKLDQEPRSIGTLSTWPDHLKHIIW 434

  Fly   428 --------------------RIGPP----YFSYNETARELNLTGNALYQGYAVDLIDAIARHVGF 468
                                |||.|    :....:..|: .:|.:.:.:|:.:|..:|:.:.:.:
plant   435 PGEAVSVPKGWEIPTNGKKLRIGVPKRIGFTDLVKVTRD-PITNSTVVKGFCIDFFEAVIQAMPY 498

  Fly   469 E--YVFVPVADQQYGKLDKETKQWNGIIGEIINN------DAHMGICDLTITQARKTAVDFTVPF 525
            :  |.|.|        .:|...:..|...::::.      ||.:|  |.||...|.:.||||:||
plant   499 DVSYEFFP--------FEKPNGEPAGNHNDLVHQVYLGQFDAVVG--DTTILANRSSFVDFTLPF 553

  Fly   526 MQLGVSILAYKSPHVEKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRD 590
            |:.||.::......|::...::|.|...|:|:..|:..|:          :....|...|..|.|
plant   554 MKSGVGLIVPLKDEVKRDKFSFLKPLSIELWLTTLVFFFL----------VGISVWTLEHRVNSD 608

  Fly   591 PEVLENQWRIHNTGWLTVASIMTAGCDILPR----SPQVRMFEATWWIFAIIIANSYTANLAAFL 651
            .....| ::.....|...::::.|     ||    |...|....||:...:::..||||:||:.|
plant   609 FRGPAN-YQASTIFWFAFSTMVFA-----PRERVLSFGARSLVVTWYFVLLVLTQSYTASLASLL 667

  Fly   652 TSSKMEGSIANLKDLSAQKKVKFGTIYGGSTYN------LLADSNETVYRLAFNLMNNDDPSAYT 710
            ||.::..:|.::..|          ::.|.|..      :|...|||.:         ...|...
plant   668 TSQQLNPTITSMSSL----------LHRGETVGYQRTSFILGKLNETGF---------PQSSLVP 713

  Fly   711 KDNLEGVDRV----RKNRGDYMFLMETTTLEYHREQNCD-LRSVGEKFGEKHYAIAVPFGAEYRS 770
            .|..|..|.:    .||.|.....:.|..:.....|.|: .:.|.|.|....:....|.|:...:
plant   714 FDTAEECDELLKKGPKNGGVAAAFLGTPYVRLFLGQYCNTYKMVEEPFNVDGFGFVFPIGSPLVA 778

  Fly   771 NLSVAILKLSERGELYDLKQKWWKNPNASCFEEPD----PDATPDMTFEELR-GIFYTLYAGILI 830
            ::|.||||::|..:..:|:..|:|....||   ||    ||:.|.:|..:|. |.|:.|:..:.:
plant   779 DVSRAILKVAESPKAVELEHAWFKKKEQSC---PDPVTNPDSNPTVTAIQLGVGSFWFLFLVVFV 840

  Fly   831 AFLIGITEF 839
            ..::.:.:|
plant   841 VCVLALGKF 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 82/422 (19%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 17/99 (17%)
PBP2_iGluR_Kainate 423..794 CDD:270432 91/427 (21%)
Lig_chan 554..828 CDD:278489 70/293 (24%)
GLR2.2NP_180048.1 PBP1_GABAb_receptor 33..412 CDD:107361 89/478 (19%)
ANF_receptor 47..392 CDD:279440 82/444 (18%)
HisJ 438..>587 CDD:223904 35/159 (22%)
GluR_Plant 452..801 CDD:270404 89/394 (23%)
Lig_chan 582..819 CDD:278489 64/274 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I1813
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.070

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