DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and grik1a

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:XP_009303592.1 Gene:grik1a / 798001 ZFINID:ZDB-GENE-030131-6502 Length:919 Species:Danio rerio


Alignment Length:900 Identity:268/900 - (29%)
Similarity:449/900 - (49%) Gaps:117/900 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 FFMCRSRGQQINIGAFFYDDELEL----EKEFMTVVNAINGPES--EQTMRFYPLIKRLKPEDGS 73
            |::  |..|.|.||..|...|.|.    |..|...|.:||...:  ..|...|. |:|:...| |
Zfish    31 FYL--SEQQVIRIGGIFETRENEPVSMDELAFKFAVTSINRNRTLMPNTTLTYD-IQRVNLFD-S 91

  Fly    74 VTMQEHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGIQAEKPNHQMTLNLY 138
            .......||.:..||||:||||..::...|..:||:..:|||:.......:. .|.|  ..:|||
Zfish    92 FEASRRVCDQLALGVAAVFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVD-NKDN--FYINLY 153

  Fly   139 PAQAILSKAYADIVQNFGWRKFTIVYDADDARAAARLQDLLQLREVHNDVVRVRKFHK-DDDFRV 202
            |....:|:|..|||..:.|:..|:||  :|:....|:|:|::....:|..:|:|:... ..|.|.
Zfish   154 PEYTSISRAILDIVIFYKWKCVTVVY--EDSTGLMRMQELIKAPSKNNLKIRIRQLPSGGGDSRP 216

  Fly   203 MWKSIRGERR--VVLDCEPNMLVELLNSSTEFGLTGQYNHIFLTNLETYTDHLEELAADNETF-- 263
            :.|.::.|:.  |:.||...:..|||......|:..:|.|.|.|.|:.:       |.|.|.:  
Zfish   217 LLKEMKKEKEFYVIFDCSYQVAAELLKQLMSMGMMTEYYHFFFTTLDLF-------ALDLEPYRY 274

  Fly   264 -AVNITAARLLVNPDPPPYSLPYGYVTQRDNIVYESS-----DPPR----------TLIHDLIHD 312
             .||:||.|||        :|...||.   :::.:.|     .||:          |....|::|
Zfish   275 SGVNMTAFRLL--------NLDDSYVA---SVIQKWSMERQLAPPKPESGLMSGIMTTAAALMYD 328

  Fly   313 ALQLFAQSWRNASFFYPDRMVVPRITCDFAASGGRTWAMGRYLARLMK-----GTSG---VNNTN 369
            |:.:.|.:.:.|:     :|.|..:.|    ...:.|..|.....|.|     |.:|   :|.|:
Zfish   329 AVFMVAVASQRAT-----QMTVSSLQC----HRHKPWRYGPRFMNLFKEAQWDGLTGRIVLNKTD 384

  Fly   370 -----FRTSILQFDEDG--QRITFNIEVYDPLDGIG--------IAIWDPRGQITQLNV-DVKAQ 418
                 |...::...|||  :|:.         ||..        |.:|:   ..|.||: ::|..
Zfish   385 GLRKEFNLDLISLKEDGTAKRVA---------DGASRPNKLWTKIGVWN---SYTGLNLTEIKDN 437

  Fly   419 KKMIYRVATR-------IGPPYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVA 476
            |.:...:|.|       :..||..|.::.:.  |.||..::||.:||:..::..:||.|....|.
Zfish   438 KNITDSLANRTLIVTTILENPYVMYKKSDKV--LYGNDRFEGYCLDLLKELSNILGFTYEVKLVT 500

  Fly   477 DQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPH-V 540
            |.:|| ...:..:|||::.|:|::.|.:.:..||||..|:..:||:.|||.||:||| |:.|: .
Zfish   501 DGKYG-AQNDKGEWNGMVRELIDHIADLAVAPLTITYVREKVIDFSKPFMTLGISIL-YRKPNGT 563

  Fly   541 EKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLENQWRIHNTGW 605
            ...:.::|.|...::|:::|::...::.:..::||.:..:|.||||||...||:||.:.:.|:.|
Zfish   564 NPGVFSFLNPLTPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPSSEVVENNFTLLNSLW 628

  Fly   606 LTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQK 670
            ..||::|..|.:::|::...|:....||.|.:||.:|||||||||||..:|:..|.:..||:.|.
Zfish   629 FGVAALMRQGSELMPKALSTRILGGIWWFFTLIIISSYTANLAAFLTVERMDSPIDSADDLAKQT 693

  Fly   671 KVKFGTIYGGSTYNLLADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTT 735
            ::::|.:..|||......|..:.|...:..|::...:|..|::.:|:.||...  ||..|||:|:
Zfish   694 RIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRKNTALVKNSKDGITRVLTT--DYALLMESTS 756

  Fly   736 LEYHREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKNPNASC 800
            :||..::||:|..||.....|.|.:..|.|:.||..:::|||:|.|.|:|:.:|:|||:  ...|
Zfish   757 IEYITQRNCNLTQVGGLIDSKGYGVGTPIGSPYRDKVTIAILQLQEEGKLHMMKEKWWR--GNGC 819

  Fly   801 FEEPDPDATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVA-LEERLTF 854
            .||...:|:. :..|.:.|||..|.||::::..:.|.||:....:.: :||.::|
Zfish   820 PEEDSKEASA-LGVENIGGIFIVLAAGLVLSVFVAIGEFIYKSHKNSDIEECVSF 873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 112/427 (26%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 20/103 (19%)
PBP2_iGluR_Kainate 423..794 CDD:270432 129/378 (34%)
Lig_chan 554..828 CDD:278489 96/273 (35%)
grik1aXP_009303592.1 Periplasmic_Binding_Protein_Type_1 37..432 CDD:299141 117/440 (27%)
ANF_receptor 57..398 CDD:279440 99/374 (26%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:304360 128/374 (34%)
Lig_chan 577..846 CDD:278489 96/273 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591029
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.860

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