Sequence 1: | NP_608557.4 | Gene: | GluRIIC / 33275 | FlyBaseID: | FBgn0046113 | Length: | 940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_021323097.1 | Gene: | grid1a / 793756 | ZFINID: | ZDB-GENE-120411-28 | Length: | 1044 | Species: | Danio rerio |
Alignment Length: | 900 | Identity: | 231/900 - (25%) |
---|---|---|---|
Similarity: | 390/900 - (43%) | Gaps: | 126/900 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 11 MWSAFFMCRSRGQQ--INIGAFFYDDELELEKEFMTVVNAIN-GPESEQTMRFYPLIKRLKPEDG 72
Fly 73 SVTMQEHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGIQAEKPNHQMTLNL 137
Fly 138 YP----------AQAILSKAYADIVQNFGWRKFTIVYDAD-DARA-------AARLQDLLQLREV 184
Fly 185 HNDVVRVRKFHKDDDFRVMWKSIRGE---------RRVVLDCEPNMLVELLNSSTEFGLTGQYNH 240
Fly 241 IFLTNLETYTDHLEELAADNETFAVNITAARLLVNPDPPPYSLPYGYVTQRDNIVYES--SDPPR 303
Fly 304 TLIHDLIHDALQLFAQSWRNASFFYPDRMVVPRITCDFAA-----------SGGRTWAMGRYLAR 357
Fly 358 LMKG-TSGVNNTNFRTSILQFDEDGQRITFNIEV----YDPLDGIGI---AIWDP----RGQITQ 410
Fly 411 LNVDVKAQKKMIYRVATRIGPPYFSYNETARELNLTGN-ALYQGYAVDLIDAIARHVGFEYVFVP 474
Fly 475 VADQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPH 539
Fly 540 VEKTLDAY--LAPFGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLENQWRIHN 602
Fly 603 TGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLS 667
Fly 668 AQKKVKFGTIYGGSTYNLL-------ADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRG 725
Fly 726 DYMFLMETTTLEYH--REQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDL 788
Fly 789 KQKWWKNPNASCFEEPDPDATPDMTFEELR-----GIFYTLYAGILIAFLIGITE 838 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
GluRIIC | NP_608557.4 | PBP1_iGluR_Kainate | 26..404 | CDD:107377 | 91/426 (21%) |
Periplasmic_Binding_Protein_Type_1 | <279..363 | CDD:299141 | 22/97 (23%) | ||
PBP2_iGluR_Kainate | 423..794 | CDD:270432 | 116/382 (30%) | ||
Lig_chan | 554..828 | CDD:278489 | 81/287 (28%) | ||
grid1a | XP_021323097.1 | Periplasmic_Binding_Protein_Type_1 | 25..424 | CDD:324556 | 92/432 (21%) |
PBP2_iGluR_delta_1 | 437..809 | CDD:270448 | 116/385 (30%) | ||
DNA_pol3_gamma3 | <915..1044 | CDD:331207 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C170590993 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000021 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.840 |