DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and grid1a

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:XP_021323097.1 Gene:grid1a / 793756 ZFINID:ZDB-GENE-120411-28 Length:1044 Species:Danio rerio


Alignment Length:900 Identity:231/900 - (25%)
Similarity:390/900 - (43%) Gaps:126/900 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MWSAFFMCRSRGQQ--INIGAFFYDDELELEKEFMTVVNAIN-GPESEQTMRFYPLIKRLKPEDG 72
            :|  ...|||....  |:|||.|..:.:..::.|...::.:: ..:..|:.|....||.::|.:.
Zfish    10 LW--ILQCRSARADSIIHIGAIFEQNAIRDDEVFQLAISDLSLNDDILQSERITHSIKLIEPNNP 72

  Fly    73 SVTMQEHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGIQAEKPNHQMTLNL 137
            ...:|| ||:|::.|:.|:...:..||::.:..:.::..|||:....:.:|    .|..:..||.
Zfish    73 FQAVQE-ACELMNQGILALVSSTGCAAANALQSLTDAMHIPHLFIQRNGDG----TPRAECQLNP 132

  Fly   138 YP----------AQAILSKAYADIVQNFGWRKFTIVYDAD-DARA-------AARLQDLLQLREV 184
            .|          ....|:.....:|....|.||.:.||:: |.|.       |:|:...:.|::|
Zfish   133 SPDGERYTLAARPPVRLNDVMITLVSELRWHKFIVFYDSEYDVRGLRGFLDQASRMGLDVSLQQV 197

  Fly   185 HNDVVRVRKFHKDDDFRVMWKSIRGE---------RRVVLDCEPNMLVELLNSSTEFGLTGQYNH 240
            ..:|.:|        |..::.::|.|         ||.:|...|......::.:.|..|..:.:|
Zfish   198 DRNVTKV--------FSTLFSTMRMEELNRYRDTLRRAILLLSPRTAQVFIHQAVETNLASKDSH 254

  Fly   241 IFLTNLETYTDHLEELAADNETFAVNITAARLLVNPDPPPYSLPYGYVTQRDNIVYES--SDPPR 303
            ....|.|.....:.||        |:....|:.|.....|..........|:|....|  .||..
Zfish   255 WVYANEEVSDTEIMEL--------VHSALGRMTVIRQIFPLWRDTNIRCMRNNHRISSLLCDPQE 311

  Fly   304 TLIHDLIHDALQLFAQSWRNASFFYPDRMVVPRITCDFAA-----------SGGRTWAMGRYLAR 357
            ..:..|...:|.|:......|:.||  |.:..|.....|:           :||  |:|   |..
Zfish   312 GYLQSLEVSSLYLYDSVLMLANAFY--RKLEDRKWHSMASLNCMRKSTKPWNGG--WSM---LDT 369

  Fly   358 LMKG-TSGVNNTNFRTSILQFDEDGQRITFNIEV----YDPLDGIGI---AIWDP----RGQITQ 410
            :.|| .||:      |.::.|..:|.......|:    |....|..:   |.||.    .|.:.:
Zfish   370 IQKGRISGL------TGLMDFRSNGANSHVQFEILGTSYSETFGKDVKRLATWDSDRGLNGSLRE 428

  Fly   411 LNVDVKAQKKMIYRVATRIGPPYFSYNETARELNLTGN-ALYQGYAVDLIDAIARHVGFEYVFVP 474
            ...| ...:.:..:|.|.:..|:....|     |:.|. ..|:|:::|::||:|:.:||:|....
Zfish   429 NRAD-HGMQGITLKVVTLLEEPFVMVAE-----NILGQPKRYKGFSIDVLDALAKILGFKYEMYQ 487

  Fly   475 VADQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPH 539
            |||.:||. .:....|||:|||:|...|.:.|..:|||..|:..|||:..::...|.||..|:  
Zfish   488 VADAKYGS-PQTNGSWNGMIGELIGKRADVAISAITITPERENVVDFSKRYLDYSVGILMTKT-- 549

  Fly   540 VEKTLDAY--LAPFGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLENQWRIHN 602
             |:.|:.:  ||||...||..|..::.|:..:..::.|:..:..:|| |....|..:...::  :
Zfish   550 -EERLNIFSLLAPFDLAVWACIAAAIPVVGVMVFLLRRVQSVRSQNP-PGPHQPASVTTSFQ--S 610

  Fly   603 TGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLS 667
            ..|:...:.:..|.:....|..:|:...:||:|.:|:.:||||||||:||.|:|:.:|...:|||
Zfish   611 AIWIVYGAFVQQGGESFMSSMALRIAMGSWWLFTLIVCSSYTANLAAYLTVSRMDNAIRTFQDLS 675

  Fly   668 AQKKVKFGTIYGGSTYNLL-------ADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRG 725
            .|.::.:||:...:.:...       .:.:.|...|...:..|...........||:.:|:  |.
Zfish   676 KQSEINYGTVRESAVFEYFRVKGTNPLEQDSTFAELWRTINKNQGQDNSVTSPAEGIRKVK--RD 738

  Fly   726 DYMFLMETTTLEYH--REQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDL 788
            .|.||.:...|||.  .:.:|.|...|.....|.|.:|:..|:.||...|..||.|.|:|:|..|
Zfish   739 PYAFLWDMAVLEYAALTDDDCTLVVTGNGMSSKGYGLALQHGSPYRDLFSQKILDLQEKGDLDIL 803

  Fly   789 KQKWWKNPNASCFEEPDPDATPDMTFEELR-----GIFYTLYAGILIAFLIGITE 838
            |||||.. ...|  :.|..|.|......||     |:|..|.||:|:|.|:...|
Zfish   804 KQKWWPR-KGRC--DLDKHAEPQTEGRALRLHSFAGVFCILAAGLLLACLVAALE 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 91/426 (21%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 22/97 (23%)
PBP2_iGluR_Kainate 423..794 CDD:270432 116/382 (30%)
Lig_chan 554..828 CDD:278489 81/287 (28%)
grid1aXP_021323097.1 Periplasmic_Binding_Protein_Type_1 25..424 CDD:324556 92/432 (21%)
PBP2_iGluR_delta_1 437..809 CDD:270448 116/385 (30%)
DNA_pol3_gamma3 <915..1044 CDD:331207
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590993
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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