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Protein Alignment GluRIIC and grik5-like.1

DIOPT Version :9

Sequence 1:	NP_608557.4	Gene:	GluRIIC / 33275	FlyBaseID:	FBgn0046113	Length:	940	Species:	Drosophila melanogaster
Sequence 2:	NP_001072565.1	Gene:	grik5-like.1 / 780020	XenbaseID:	XB-GENE-5860197	Length:	479	Species:	Xenopus tropicalis

Alignment Length:	462	Identity:	136/462 - (29%)
Similarity:	225/462 - (48%)	Gaps:	26/462 - (5%)

- Green bases have known domain annotations that are detailed below.

  Fly   403 DPRGQITQLNVDVKAQKKMIYRVATRIGPPYFSYNETARELNLTGNALYQGYAVDLIDAIARHVG 467
            :.:|.|.:.....|.|......|.|.:..|:....|:..|          |:.:||:..:|:.:|
Frog    23 ESKGSIHKEKERSKRQALKHLTVTTIMEQPFSMKTESGME----------GFCIDLLSELAQSLG 77

  Fly   468 FEYVFVPVADQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSI 532
            |.|....|.|.:||..|:: ..|||::||::..:|.:.:..||||.||:..:.||.||||.|:||
Frog    78 FNYTIKEVKDGRYGAKDQD-GNWNGMVGEVLRKEADLAVAPLTITGARERELAFTKPFMQTGISI 141

  Fly   533 LAYKSPHVEKT-LDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLEN 596
            |..|....|.: |..:|.||..|.||.||::..|.:....:|.|:|..:|       .:....:|
Frog   142 LLRKDDVSENSYLFGFLTPFSKETWIGILVAYVVTSLCLFLVGRLSPCEW-------TELSTEQN 199

  Fly   597 QWRIHNTGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKME-GSI 660
            .:...|:.|..|.:....|.:..|:|...|:....||||:|::..:|.|:.||||.|..|: .:|
Frog   200 NFNFLNSLWFGVGAFTLQGAEPHPKSVSARIIAVIWWIFSIVLVAAYIASFAAFLNSDSMQTTNI 264

  Fly   661 ANLKDLSAQKKVKFGTIYGGSTYNLLADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRG 725
            ...:||..|:.::||||...||:....:|....||:.:..|:........|...|||.||:::
Frog   265 QTFEDLVNQRTLEFGTINSSSTFQFFKNSKNPTYRMIYEYMDKRKDELLVKSFAEGVRRVKES-- 327

  Fly   726 DYMFLMETTTLEYHREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQ 790
            :|.||.|:...:....::|||....:....:.|.||....:.....||||||:.:|.|.:..|::
Frog   328 NYAFLGESVMQDIMVAKHCDLVRAPQIIAGRGYGIAASLDSPLIKPLSVAILEQTESGNIEYLRK 392

  Fly   791 KWWKNPNASCFEEPDPDATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVALEERLTFK 855
            |||.|   :|..:......| :....|.|||..|..|:.:..:..:.|.::..:..|.:::.:..
Frog   393 KWWDN---TCNMKRSAGWNP-VQPHTLGGIFLILGIGLALGVIAALVELVLKARNNADQQKKSCC 453

  Fly   856 DAFKKEI 862
            .||.:|:
Frog   454 SAFSEEM 460

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.