DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and si:ch211-251b21.1

DIOPT Version :10

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_001138274.1 Gene:si:ch211-251b21.1 / 571720 ZFINID:ZDB-GENE-060809-5 Length:458 Species:Danio rerio


Alignment Length:402 Identity:125/402 - (31%)
Similarity:216/402 - (53%) Gaps:24/402 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   452 QGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARK 516
            :|:.:|::.||:..:||:|....|.|.:|||.| ::..|||:|||::..:|.:.:..||:|..|:
Zfish    44 EGFCIDMLSAISNKLGFKYDVHLVKDGRYGKTD-DSGNWNGMIGEVVRGEADIAVAPLTLTAQRE 107

  Fly   517 TAVDFTVPFMQLGVSILAYKS-PHVEKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMD 580
            ..||.:.||||.|:|.:..|. ...:....:.|..|..|:|:.:|::..:.:....:|:|||..:
Zfish   108 AVVDMSKPFMQTGLSFIMRKDLGSDDSQFLSLLKLFSTEMWMGVLVAYLLTSICIFLVSRISPCE 172

  Fly   581 WENPHPCNRDPEVLENQWRIHNTGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTA 645
            ||.|...|       |.:.:.::.|.||.::...|....|::...|:..:.||||::::...|.|
Zfish   173 WEQPEKDN-------NSFTLSHSFWYTVGALTLQGAGPHPKALSGRVITSIWWIFSLVLLACYFA 230

  Fly   646 NLAAFLTSSKMEGSIANLKDLSAQKKVKFGTIYGGSTYNLLADSNETVYRLAFNLMNNDDPSAYT 710
            ||:.:|.|...:.||...:||:.|..:::|||...|::|...:||...|...:..:.  :..:|:
Zfish   231 NLSLWLHSDNQQLSIKTFEDLANQNVIEYGTIKDSSSFNFFKNSNNPTYHRIYEHIK--EAQSYS 293

  Fly   711 KDNLEGVDRVRKNRGDYMFLMETTTLEYHREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVA 775
            .:..||..|.:|  |:|.|:.|:.:|:....:.|:|....|..|.:.|:||.|.|:....|||||
Zfish   294 LNAAEGFRRAQK--GNYAFIGESVSLDLAVARYCNLTRAPEIIGMRGYSIAAPLGSPLIKNLSVA 356

  Fly   776 ILKLSERGELYDLKQKWWKNPNASCFEEPDPDATPDMTFEELRGIFYTLYAGILIAFLIGITEFL 840
            ||:|||.|||...:.|||.   :||..: |....| :....|:|:|      :|:||.:|:..||
Zfish   357 ILRLSESGELDYFRSKWWA---SSCVAK-DSKGAP-LKPASLKGVF------LLLAFGLGLGIFL 410

  Fly   841 VYVQQVALEERL 852
            ..::..|...::
Zfish   411 ALMELAAKSRKV 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 Periplasmic_Binding_Protein_type1 26..409 CDD:471960
PBP2_iGluR_Kainate 423..794 CDD:270432 110/342 (32%)
Lig_chan 554..827 CDD:459656 83/272 (31%)
si:ch211-251b21.1NP_001138274.1 PBP2_iGluR_non_NMDA_like 25..375 CDD:270403 110/342 (32%)
Blue background indicates that the domain is not in the aligned region.

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