DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and grin2bb

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_001121809.1 Gene:grin2bb / 559976 ZFINID:ZDB-GENE-061207-27 Length:1770 Species:Danio rerio


Alignment Length:972 Identity:214/972 - (22%)
Similarity:370/972 - (38%) Gaps:223/972 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 LKPEDGSVTMQEHACDLIDNGVAA----------IFGPSS--KAASDIVALVCNSTGIPHIEFDI 119
            |.|:...|||.|.....|.|.:.|          :||..:  :|.:.|:..:...|.||.:....
Zfish   138 LPPKVELVTMNETDPKSIINRICALMSRNWLQGVVFGDDTDQEAIAQILDFISAQTHIPILGIRG 202

  Fly   120 SDEGIQAEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKFTIV---YDADDARAAARLQDLLQL 181
            ....|.|.|.:|.|.....|:....:....:|::.:.|..|:||   |..               
Zfish   203 GSSMIMAAKDDHSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYYPG--------------- 252

  Fly   182 REVHNDVVRVRKFHKDDDFRVMWK----------------SIRGERR------VVLDCEPNMLVE 224
               |.|.|...:...|:.| |.|:                .|:.:.:      ::|.|.......
Zfish   253 ---HQDFVNRIRSTVDNSF-VGWELEEVLLLDMSVDDGDSKIQNQMKKLQSPVILLYCTKEEATT 313

  Fly   225 LLNSSTEFGLTGQYNHIFLTNLETYTDHLEELAADNETFAVNITAARLL-VNPDPPPYSLPYGYV 288
            :...:...|||| |.         ||..:..|.|.:.....|:....|: |:.|...|.|.   .
Zfish   314 IFEVAHSVGLTG-YG---------YTWIVPSLVAGDTDNVPNVFPTGLISVSYDEWDYGLE---A 365

  Fly   289 TQRDNIVYES--------SDPPRTLIHDLIHDALQLFAQSWRNASFFYPDRMVVPRITCDFAASG 345
            ..||.:...:        ...|.||:....|.|               ||:            .|
Zfish   366 RVRDAVAIIAMATSTMMLDRGPHTLLKSGCHGA---------------PDK------------KG 403

  Fly   346 GRTWAMGRYLARLMKGTSGVNNTNFRTSILQFDEDGQR-------ITFNIE-VYDPLD------- 395
            .::......|..||       |..|....|.|.|||.:       |..|.| .|:.:.       
Zfish   404 SKSGNPNEVLRYLM-------NVTFEGRNLSFSEDGFQMHPKLVIILLNKERQYERVGKWENGSL 461

  Fly   396 GIGIAIWDPRGQITQLNVDVKAQKKMIYRVATRIGPPYFSYNET--------------AREL--- 443
            .:...:| ||   .:|..|.:.::.....:.|....|:....:.              .::|   
Zfish   462 AMKYHVW-PR
---FELYSDAEEREDDHLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPCRKQLKLQ 522

  Fly   444 NLTGNA-LY-----QGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGIIGEIINNDA 502
            ||||:: :|     :|:.:|::..||:.|.|.|....|.:.::||  |....|||::||::..:|
Zfish   523 NLTGDSGIYIKRCCKGFCIDILKKIAKSVKFTYDLYLVTNGKHGK--KINGTWNGMVGEVVLKNA 585

  Fly   503 HMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKTLDAYLAPFGGEVWIWILISVFVMT 567
            ||.:..|||.:.|...:||:|||::.|:|::..:| :...:..|:|.||..:||    :.:|||.
Zfish   586 HMAVGSLTINEERSEVIDFSVPFIETGISVMVSRS-NGTVSPSAFLEPFSADVW----VMMFVML 645

  Fly   568 FLKTIVARISKMDWENPHPCNR----DPEVLENQWRIHNTGWLTVASIMTAGCDIL-PRSPQVRM 627
            .:.:.|| :...::.:|...||    ..|.....:.|....||....:......:. |:....::
Zfish   646 LIVSAVA-VFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKI 709

  Fly   628 FEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQ------KKVKFGTIYGGSTYNLL 686
            ..:.|..||:|...|||||||||:...:....:..|.|...|      ...:|||:..|||    
Zfish   710 MVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVTGLSDKKFQHPNDFSPPFRFGTVPNGST---- 770

  Fly   687 ADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTTLEY--HREQNCDLRSV 749
                |...|..:..|::...|.:.|:..|.:..::..:.| .|:.:...|.|  .|::.|.|.::
Zfish   771 ----ERNIRNNYKEMHSYMTSFHQKNVNEALHSLKSGKLD-AFIYDAAVLNYMAGRDEGCKLVTI 830

  Fly   750 GEK--FGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKNPNASCFEEPDPDATPDM 812
            |..  |....|.||:...:.::..:.:|||:|...||:.:|:..|.   ...|..|.:...:..:
Zfish   831 GSGYIFATTGYGIAIQKDSGWKRAVDLAILQLFGDGEMEELEALWL---TGICHNEKNEVMSSQL 892

  Fly   813 TFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVALEERLTFKDAFKKEIRFVLCVWNNRKP--- 874
            ..:.:.|:||.|.|.:.::.:..|.|.|.|.|                 :||......:.||   
Zfish   893 DVDNMAGVFYMLGAAMALSLITFIAEHLFYWQ-----------------LRFCFMGVCSGKPGMT 940

  Fly   875 ---------IVAGTPI---SSVRTTPRRSLDKSLDRTPKSSRRVVIGRSSEEMREMAQGSGS 924
                     .:.|..|   .|...:|..::..:::.|..:..|::  |:::.|..:...:||
Zfish   941 FSISRGIYSCIHGVQIEENKSALNSPSATMKMNMNNTHSNILRLL--RTAKNMTSVPGVNGS 1000

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 78/397 (20%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 15/91 (16%)
PBP2_iGluR_Kainate 423..794 CDD:270432 106/408 (26%)
Lig_chan 554..828 CDD:278489 70/288 (24%)
grin2bbNP_001121809.1 PBP1_iGluR_NMDA_NR2 107..470 CDD:107373 78/398 (20%)
ANF_receptor 138..442 CDD:279440 73/369 (20%)
PBP2_iGluR_NMDA_Nr2 482..882 CDD:270436 107/419 (26%)
Lig_chan 636..908 CDD:278489 70/288 (24%)
NMDAR2_C 919..1770 CDD:287527 17/101 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591000
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.